View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1464_low_2 (Length: 600)
Name: NF1464_low_2
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1464_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 17 - 587
Target Start/End: Original strand, 31633625 - 31634195
Alignment:
| Q |
17 |
tttgacactcatgacacaaactattatttgcattccactccaccccaaaaccattattaataatatacttcaaattttccacacttgaatttgttgcgac |
116 |
Q |
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| T |
31633625 |
tttgacactcatggcacaaactattatttgcattccactccaccccaaaaccattatcaataacatccttcaaattttccacacttgaatttgttgcgac |
31633724 |
T |
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| Q |
117 |
cctttcagcttctgactccaaaattggaataaccactttagatttgcacgtccctaacatttcactaaacgaatccgaactcccgacatcatcaacaatg |
216 |
Q |
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| T |
31633725 |
cctttcagcctctgactccaaaaatggaacaaccactctagatttgcatgttctcagtgtctcactaaacgaatccaaactctcggcattatcagcaacg |
31633824 |
T |
|
| Q |
217 |
ctctccaacataaaatagttaaccatttgagctccattcacactacaattaaactgaggtgaaaaactatctggtataggaaatggagtgtaaggacaat |
316 |
Q |
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| T |
31633825 |
ctctccaacataaaataattaaccatttgagttccatttatactacagttaaactgcggggaaaagctatctggcataagaaatggggtgtgaggacaat |
31633924 |
T |
|
| Q |
317 |
catagtagagtgtcaagttatgagaatccgaaccataatcgaagaaagtgcaatctaaagttgtgttcttaaggttggtgggacaaacattgttccaata |
416 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| |
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| T |
31633925 |
catagtagagtgtcaaattatgagaatccgaaccataatcgaagaaagtgcaatctaatgttgtgtttttaaggctggtgggacaaacattgttccaata |
31634024 |
T |
|
| Q |
417 |
atcagttcttacaactttgagtctatgatcagaatcactgacttcaagaattctataactttgtgacataatggtaatgcttgcaaattcatctttgcat |
516 |
Q |
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| T |
31634025 |
atcagttctaacaactttgagtctatgatctgaatcactgacttcaagaattttataattttgtgacataatggtaatgcttgctaattcatctttgcat |
31634124 |
T |
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| Q |
517 |
tgtagctcaaaagaagggtggccacaatattgtggtctacttgatccccagaaaggatacctcaagttttt |
587 |
Q |
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| T |
31634125 |
tgtagctcaaaagaagggtggccacaatattgtggtctacttgatccccagaaaggatacctcaagttttt |
31634195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 379 - 587
Target Start/End: Original strand, 19991458 - 19991665
Alignment:
| Q |
379 |
gtgttcttaaggttggtgggacaaacattgttccaataatcagttcttacaactttgagtctatgatcagaatcactgacttcaagaattctataacttt |
478 |
Q |
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|||||||||| |||||||||||||| ||| ||||| ||||| ||||||||||||||| ||||||||||||| || |||||||||||||||||||| | | |
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| T |
19991458 |
gtgttcttaaagttggtgggacaaatattattccattaatcggttcttacaactttgtgtctatgatcagagtcggtgacttcaagaattctataattct |
19991557 |
T |
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| Q |
479 |
gtgacataatggtaatgcttgcaaattcatctttgcattgtagctcaaaagaagggtggccacaatattgtggtctacttgatccccagaaaggatacct |
578 |
Q |
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| T |
19991558 |
gtgacatcatggtaatgcttgcaaattcatctttgcattgtatctcaaaattgtggtggcca-aatattggcgtctacttgatccccataaaggatatat |
19991656 |
T |
|
| Q |
579 |
caagttttt |
587 |
Q |
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||||||||| |
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| T |
19991657 |
caagttttt |
19991665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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