View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1464_low_20 (Length: 320)
Name: NF1464_low_20
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1464_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 38079706 - 38080015
Alignment:
| Q |
1 |
tcaccttcaaccctttatgccttggcttgtgttcttgaaaatgttccttttatcaatggaagccctcaaaacacctttgtcccaggttattttccaaatt |
100 |
Q |
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| T |
38079706 |
tcaccttcaaccctttatgccttggcttgtgttcttgaaaatgttccttttatcaatggaagccctcaaaacacctttgtcccaggttattttccaaatt |
38079805 |
T |
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| Q |
101 |
gccctttaattaattttaattttatgtatgcaaattaaatttcttgtaaccattatattatgaacgtaaccaatgagtgttgcaaatttttaaaaaattg |
200 |
Q |
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| T |
38079806 |
gccctttaattaattttaattttatgtatgcaaattaaatttcttgtgaccattatattatgaacgtaaccaatgagtgttgcaaattttaaaaaaattg |
38079905 |
T |
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| Q |
201 |
aattttgcttgtatgatggttcattagggttgattgatctggccatcaaaaggaacagtttgattggtggagatgacttcaagagtggtcagacaaaaat |
300 |
Q |
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| T |
38079906 |
aattttgcttgtatgatggttcattagggttgattgatctggccatcaaaaggaacagtttgattggtggagatgacttcaagagtggtcagacaaaaat |
38080005 |
T |
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| Q |
301 |
caagtctgtg |
310 |
Q |
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| T |
38080006 |
caagtctgtg |
38080015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 39699268 - 39699355
Alignment:
| Q |
1 |
tcaccttcaaccctttatgccttggcttgtgttcttgaaaatgttccttttatcaatggaagccctcaaaacacctttgtcccaggtt |
88 |
Q |
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| T |
39699268 |
tcaccttccaccctgtttgccattgcttgtgttatggagaatgttcctttcatcaatggaagtcctcagaacacttttgttccaggtt |
39699355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 39699445 - 39699521
Alignment:
| Q |
233 |
attgatctggccatcaaaaggaacagtttgattggtggagatgacttcaagagtggtcagacaaaaatcaagtctgt |
309 |
Q |
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| T |
39699445 |
attgatcttgccatcaagaacaactgtttgattggtggtgatgatttcaaaagtggtcagaccaaaatgaaatctgt |
39699521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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