View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1464_low_21 (Length: 315)

Name: NF1464_low_21
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1464_low_21
NF1464_low_21
[»] chr7 (3 HSPs)
chr7 (11-305)||(3929931-3930225)
chr7 (52-305)||(3928620-3928873)
chr7 (43-272)||(21317471-21317700)
[»] chr2 (5 HSPs)
chr2 (8-299)||(13576218-13576509)
chr2 (43-263)||(34571448-34571668)
chr2 (38-149)||(34562649-34562760)
chr2 (73-263)||(34578946-34579136)
chr2 (73-263)||(34584695-34584885)
[»] chr8 (8 HSPs)
chr8 (12-305)||(43479645-43479938)
chr8 (12-269)||(38799395-38799652)
chr8 (12-269)||(38821865-38822122)
chr8 (58-269)||(25865600-25865811)
chr8 (52-293)||(26592044-26592285)
chr8 (43-227)||(41943886-41944070)
chr8 (12-119)||(38807046-38807153)
chr8 (58-147)||(44343977-44344066)
[»] chr5 (7 HSPs)
chr5 (8-305)||(12531356-12531653)
chr5 (1-193)||(9866617-9866809)
chr5 (8-305)||(12546966-12547263)
chr5 (8-203)||(9894610-9894803)
chr5 (52-146)||(9870004-9870098)
chr5 (61-158)||(38735528-38735625)
chr5 (8-92)||(12538675-12538759)
[»] scaffold0197 (1 HSPs)
scaffold0197 (43-272)||(30909-31137)
[»] chr4 (7 HSPs)
chr4 (13-299)||(24860416-24860702)
chr4 (39-269)||(34748655-34748885)
chr4 (46-143)||(40036062-40036159)
chr4 (73-156)||(53290749-53290832)
chr4 (169-209)||(44771097-44771137)
chr4 (184-263)||(40035830-40035909)
chr4 (46-143)||(40045370-40045467)
[»] chr1 (3 HSPs)
chr1 (112-221)||(17769233-17769342)
chr1 (112-221)||(1539185-1539294)
chr1 (58-150)||(7594148-7594240)
[»] chr3 (1 HSPs)
chr3 (112-220)||(27440846-27440954)


Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 3929931 - 3930225
Alignment:
Q  11 tctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaa 110  Q
    |||||||||| | |||||||||||||   || ||||| || ||||  ||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  3929931 tctaagccctttcgcctctgattcttcttgcaagttgaatatccttcggcataatagtaactctcttagcatgaatggcacaaagattcgtatcttcaaa 3930030  T
Q  111 caaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacc 210  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  3930031 caaaccaacaagatacgcttcagcagcttcttgaagagcagaaacagcactactctgaaatcgaagatcagttttgaaatcctgagcgatttcacgaacc 3930130  T
Q  211 aatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcgactgttcctggacggaatctgtg 305  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || || | |||||||||||||||||||||||||||    
T  3930131 aatctttggaatggaagtttcctaatgagaagttcagtgctcttctgatacttgcggatctcacgaagtgcgactgttcctggacggaatctgtg 3930225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 52 - 305
Target Start/End: Original strand, 3928620 - 3928873
Alignment:
Q  52 tcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcag 151  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | ||||||||||   ||||||||| ||||    
T  3928620 tccttaggcacaatagtaactctcttagcatgaatagcacaaagattcatatcttcaaacaaaccaacaatacacgcttcagcgatttcttgaagagcag 3928719  T
Q  152 aaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgct 251  Q
    ||||||| ||  |||| |||| ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |    
T  3928720 aaacagcgctgatctggaatcggagatcagttttgaaatcctgagcgatttcatgaaccaatcttttgaaaggaagtttcctaatgagaagctcagtgat 3928819  T
Q  252 cttctgatactttcggatttcgcgcaatgcgactgttcctggacggaatctgtg 305  Q
    ||| |||||||| | |||||| |||||||||||||||||||| | |||||||||    
T  3928820 cttttgatacttcctgatttcacgcaatgcgactgttcctggtctgaatctgtg 3928873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 21317700 - 21317471
Alignment:
Q  43 agttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttctt 142  Q
    ||||| || |||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||| |||||||    
T  21317700 agttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagccgcttctt 21317601  T
Q  143 gaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaag 242  Q
    |||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |  | ||||||||||||||| || || |||||    
T  21317600 gaagagcagaaacagcactgctctggaatctgagatcggttttgaaatcctgagcgatttcacgaacaagacgttggaatggaagttttcttatcagaag 21317501  T
Q  243 ctcagtgctcttctgatactttcggatttc 272  Q
    ||||||||||||||| ||||| ||||||||    
T  21317500 ctcagtgctcttctggtacttgcggatttc 21317471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 8e-95; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 13576509 - 13576218
Alignment:
Q  8 aaatctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctc 107  Q
    ||||||||||||| | |||||||||||||   || ||||| || |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13576509 aaatctaagccctttcgcctctgattcttctcgcaagttgaatatccttaggcataatagtaaccctcttagcatgaatagcacaaagattcgtatcctc 13576410  T
Q  108 aaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacga 207  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||| || ||||| | |||||| ||||||||||||||||| ||||| |||    
T  13576409 aaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgaaaacggagatccgttttgaaatcctgagcaatttctcga 13576310  T
Q  208 accaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcgactgttcctggacggaa 299  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| || |  ||||| ||||| ||||||||    
T  13576309 accaatctttggaatggaagcttccttatgagaagctcggtgctcttctgatacttgcggatttcacgaagagcgacggttccaggacggaa 13576218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 263
Target Start/End: Original strand, 34571448 - 34571668
Alignment:
Q  43 agttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttctt 142  Q
    ||||| || |||| ||||||||| ||||| |||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| ||||| || ||||| |    
T  34571448 agttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcct 34571547  T
Q  143 gaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaag 242  Q
    |||||||   ||| |||   ||||| ||||  | ||| || |||||||||||||| ||||||||||| |  |  |||||||||||||| |  || | |||    
T  34571548 gaagtgcgagaaccgcatggctctggaatcgtaaatccgtcttgaaatcctgagcaatttcacgaacaagacgctggaatggaagtttacggatcaaaag 34571647  T
Q  243 ctcagtgctcttctgatactt 263  Q
     || || ||||||||||||||    
T  34571648 ttcggtactcttctgatactt 34571668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 149
Target Start/End: Original strand, 34562649 - 34562760
Alignment:
Q  38 aagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagc 137  Q
    |||| ||||| || |||| ||||||||| ||||| |||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| ||||| || ||    
T  34562649 aagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgc 34562748  T
Q  138 ttcttgaagtgc 149  Q
    ||| ||||||||    
T  34562749 ttcctgaagtgc 34562760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 263
Target Start/End: Original strand, 34578946 - 34579136
Alignment:
Q  73 ctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatc 172  Q
    |||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| |||||  | ||||| ||||||||   ||| |||   ||||| ||||    
T  34578946 ctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaatc 34579045  T
Q  173 tgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactt 263  Q
    | | ||| || ||||||| |||||| ||||||||||| |  |  |||||||||||||| | ||| | ||| || || | ||||||||||||    
T  34579046 tcaaatctgtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatactt 34579136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 263
Target Start/End: Original strand, 34584695 - 34584885
Alignment:
Q  73 ctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatc 172  Q
    |||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| |||||  | ||||| ||||||||   ||| |||   ||||| ||||    
T  34584695 ctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaatc 34584794  T
Q  173 tgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactt 263  Q
    | | ||| || ||||||| |||||| ||||||||||| |  |  |||||||||||||| | ||| | ||| || || | ||||||||||||    
T  34584795 tcaaatctgtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatactt 34584885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 12 - 305
Target Start/End: Original strand, 43479645 - 43479938
Alignment:
Q  12 ctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaac 111  Q
    ||||||||||| |||||| ||||||   || ||||| || |||| ||||||||| ||||| ||||||||||||||||| ||||| || ||||| ||||||    
T  43479645 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcgcaaaggttagtatcttcaaac 43479744  T
Q  112 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 211  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||| | |||||    
T  43479745 aaaccaacaagataagcttcagcggcttcttgaagagcagaaacagcgctactctggaacctgagatcagttttgaaatcctgagcgatttccctaacca 43479844  T
Q  212 atctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcgactgttcctggacggaatctgtg 305  Q
    |||||||||||||||| ||||| ||||||||||| || |||||||||||||| ||||| || || |  || || ||||| ||||||||||||||    
T  43479845 atctttggaatggaagcttcctgatgagaagctcggtactcttctgatacttgcggatctcacgaagagcaacagttccaggacggaatctgtg 43479938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 38799652 - 38799395
Alignment:
Q  12 ctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaac 111  Q
    |||||||||||  ||||||||||||   || || || ||||||| |||||| || |||||||||||||||||||| |||||||| || || || |||||     
T  38799652 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaag 38799553  T
Q  112 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 211  Q
    | |||||| |  || |||||||||||||||||||| || ||||| || || ||||| ||||| ||||| || |||||||| ||||| ||||||||||| |    
T  38799552 agaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaa 38799453  T
Q  212 atctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggat 269  Q
      | ||||||||||||||| |  ||||||||||||||||||||||||||||| |||||    
T  38799452 gacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacggat 38799395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 38821865 - 38822122
Alignment:
Q  12 ctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaac 111  Q
    |||||||||||  ||||||||||||   || || || ||||||| |||||| || |||||||||||||||||||| |||||||| || || || |||||     
T  38821865 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaag 38821964  T
Q  112 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 211  Q
    | |||||| |  || |||||||||||||||||||| || ||||| || || ||||| ||||| ||||| || |||||||| ||||| ||||||||||| |    
T  38821965 agaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaa 38822064  T
Q  212 atctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggat 269  Q
      | ||||||||||||||| |  ||||||||||||||||||||||||||||| |||||    
T  38822065 gacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacggat 38822122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 58 - 269
Target Start/End: Complemental strand, 25865811 - 25865600
Alignment:
Q  58 ggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacag 157  Q
    |||||||| || || |||||||||||||| ||||| | ||| |||||||||||||| || |||||||| || ||||||||||| |||||||||  |||||    
T  25865811 ggcataatcgttaccctcttagcatgaattgcacacaaattagtatcctcaaacaatcccacaagataagcctcagcagcttcctgaagtgcaagaacag 25865712  T
Q  158 cactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctg 257  Q
    ||  |||||||||||| ||||| ||||||||||||||||| ||||||||||| |  |  ||||||||||| || |  || | ||||||||| ||||||||    
T  25865711 catgactctgaaatctcagatccgttttgaaatcctgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagctcagtactcttctg 25865612  T
Q  258 atactttcggat 269  Q
    |||||| |||||    
T  25865611 atacttacggat 25865600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 52 - 293
Target Start/End: Complemental strand, 26592285 - 26592044
Alignment:
Q  52 tcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcag 151  Q
    |||| |||||| |||||||| | ||||||||||||||| || || || |||||||||||||| ||||||||||| || || || |||||||| || || |    
T  26592285 tccttaggcatgatagtaacacgcttagcatgaatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttcttgcagcgccg 26592186  T
Q  152 aaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgct 251  Q
    | ||||||   |||||||| | |||||| || |||||||||||||| || |||||||| |  |  ||||| |||||||| | ||||||||| || |||||    
T  26592185 acacagcagagctctgaaaacggagatccgtcttgaaatcctgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttcggtgct 26592086  T
Q  252 cttctgatactttcggatttcgcgcaatgcgactgttcctgg 293  Q
    |||||| ||||| ||||| || || | |||||| ||||||||    
T  26592085 cttctggtacttgcggatctcacggagtgcgacggttcctgg 26592044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 43 - 227
Target Start/End: Complemental strand, 41944070 - 41943886
Alignment:
Q  43 agttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttctt 142  Q
    ||||| |||||||  |||||||| ||||| |||||||||||||| ||||| | ||| |||||||||||||| ||||| ||||| ||||| || ||||| |    
T  41944070 agttgaatgtcctttggcataattgtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaatccaaccagataagcttctgctgcttcct 41943971  T
Q  143 gaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaag 227  Q
    ||||||||  |||||||   ||||| ||||||||||| || |||||||| ||||| ||||||||||| |  | ||||||||||||    
T  41943970 gaagtgcaagaacagcatggctctggaatctgagatccgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaag 41943886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 38807153 - 38807046
Alignment:
Q  12 ctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaac 111  Q
    ||||||||||| |||||||||||||   || ||||| ||||||| |||||| ||||||||||||||||||||||| || ||  |||| || ||||||||     
T  38807153 ctaagccctctcgcctctgattcttcttgcaagttgaatgtccttaggcatgatagtaactctcttagcatgaattgcgcacggatttgtgtcctcaaag 38807054  T
Q  112 aaaccaac 119  Q
    | ||||||    
T  38807053 agaccaac 38807046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 44344066 - 44343977
Alignment:
Q  58 ggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagt 147  Q
    |||||||| || || |||||||||||||||||||| | ||| |||||||||||||| || || ||||| || ||||| ||||| ||||||    
T  44344066 ggcataatcgtcaccctcttagcatgaatagcacacaaattggtatcctcaaacaatcccacgagataagcctcagctgcttcctgaagt 44343977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 12531653 - 12531356
Alignment:
Q  8 aaatctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctc 107  Q
    ||||||||||||||| ||||||||||||   ||||||||| || |||| |||||| |||||||| |||||||||||||| ||||| ||||| ||||| ||    
T  12531653 aaatctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttc 12531554  T
Q  108 aaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacga 207  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||| || || |||| |||||| ||||||||||| |||||||||||||||    
T  12531553 aaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacga 12531454  T
Q  208 accaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcgactgttcctggacggaatctgtg 305  Q
    || |  || ||||||||||| ||||| || |||||||| ||||||||||| ||||| ||||| || || | ||| || ||||||||||||||||||||    
T  12531453 acaagcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcggatctcacgaagtgcaacagttcctggacggaatctgtg 12531356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 9866617 - 9866809
Alignment:
Q  1 gaatcagaaatctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  9866617 gaatcagaaatctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttag 9866716  T
Q  101 tatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcct 193  Q
    |||| ||||||||||||||||||||  ||| ||||||||||||||| ||||||||| |||||||||  || || |||||||| ||||||||||    
T  9866717 tatcttcaaacaaaccaacaagatagtctttagcagcttcttgaagagcagaaacatcactactctagaacctcagatcagtcttgaaatcct 9866809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 12546966 - 12547263
Alignment:
Q  8 aaatctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctc 107  Q
    |||||||||| |||| |||||| |||||   ||| ||||| || |||| |||||| |||||||| |||||||||||||| ||||| ||||| ||||| ||    
T  12546966 aaatctaagctctctcgcctctaattctgcgagcaagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttc 12547065  T
Q  108 aaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacga 207  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||| || || |||| |||||| ||||||||||| |||||||||||||||    
T  12547066 aaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacga 12547165  T
Q  208 accaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcgactgttcctggacggaatctgtg 305  Q
    || |  || ||||||||||| ||||| || |||||||| ||||||||||| ||||| ||||| || || | ||| || ||||||||||||||||||||    
T  12547166 acaagcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcggatctcacgaagtgcaacagttcctggacggaatctgtg 12547263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 9894803 - 9894610
Alignment:
Q  8 aaatctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctc 107  Q
    ||||||||||||||| ||||||||||||   ||| ||||  || ||||  | |||||||||||||| ||||||||||||||| |||| ||| ||||| ||    
T  9894803 aaatctaagccctctcgcctctgattctgcgagcaagttcaatatcctt-gccataatagtaactcacttagcatgaatagcgcaaatattagtatcttc 9894705  T
Q  108 aaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttc 203  Q
    |||||||| ||||| | | |||||| || |||||||||  |||||||||||||||||||| || || ||| |||| ||| |||||||||| |||||    
T  9894704 aaacaaactaacaaaacaagcttcaacaacttcttgaacagcagaaacagcactactctggaacctcagaccagtcttg-aatcctgagcaatttc 9894610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 9870098 - 9870004
Alignment:
Q  52 tcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaag 146  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||  |||| | |||||||||||||| ||| |||||| |||||||||||||    
T  9870098 tccttaggcataatagtaactctcttagcatgaatagcgcaaagattaatatcttaaaacaaaccaacaaaataagcttcaacagcttcttgaag 9870004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 38735625 - 38735528
Alignment:
Q  61 ataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagc 158  Q
    ||||| ||||| |||||||||||||||| |||||| || ||||| ||||||||||||||||||||  |||||    ||| |||||| |||||||||||    
T  38735625 ataattgtaaccctcttagcatgaatagtacaaaggttagtatcttcaaacaaaccaacaagataaacttcaatgactttttgaagagcagaaacagc 38735528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 12538759 - 12538675
Alignment:
Q  8 aaatctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcaca 92  Q
    |||||||||| |||| |||||||||| |   || |||||| ||  | | |||||| |||||||||||||||||||||||||||||    
T  12538759 aaatctaagcactcttgcctctgattatgcgagtgagttgaatacctttaggcatgatagtaactctcttagcatgaatagcaca 12538675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 31137 - 30909
Alignment:
Q  43 agttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttctt 142  Q
    ||||| || |||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||    
T  31137 agttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagcagcttctt 31038  T
Q  143 gaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaag 242  Q
    |||| |||||||||||||| ||||| ||||||||||  ||||||||||||||||||||||||||||| |  | ||||||| ||||||| || || |||||    
T  31037 gaagagcagaaacagcactgctctggaatctgagataggttttgaaatcctgagcgatttcacgaacaagacgttggaat-gaagttttcttatcagaag 30939  T
Q  243 ctcagtgctcttctgatactttcggatttc 272  Q
    ||||||||||||||| ||||| ||||||||    
T  30938 ctcagtgctcttctggtacttgcggatttc 30909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 24860702 - 24860416
Alignment:
Q  13 taagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaaca 112  Q
    |||||||||| ||||||||||||   ||||||||| || ||||  |||||||| ||||||||||||||||||||||| |||||||| ||||| ||||| |    
T  24860702 taagccctctcgcctctgattctgcgagcgagttgaatatccttgggcataatggtaactctcttagcatgaatagcgcaaagatttgtatcttcaaaga 24860603  T
Q  113 aaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaa 212  Q
      ||||| ||||| |||||||||||||||||||| ||||||||||| |||||||| || | |||||| ||||||||||| ||||||||||||||||| |     
T  24860602 gtccaacgagataagcttcagcagcttcttgaagagcagaaacagcgctactctggaaacggagatcggttttgaaatcttgagcgatttcacgaacgag 24860503  T
Q  213 tctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcgactgttcctggacggaa 299  Q
     | ||||||||||||||| |  ||||||||||| ||||| || || ||||| ||||||||||| | ||| || ||||| ||||||||    
T  24860502 acgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcggatttcgcgaagtgcaacggttccgggacggaa 24860416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 269
Target Start/End: Complemental strand, 34748885 - 34748655
Alignment:
Q  39 agcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagct 138  Q
    |||||| ||||| |||| |||||| ||||| || | ||| |||||||| ||||| || || ||||||||||| | |||||| ||||| || ||||| |||    
T  34748885 agcgagctggatatccttaggcatgatagtgacacgcttggcatgaatggcacagaggttagtatcctcaaagagaccaacgagataagcctcagccgct 34748786  T
Q  139 tcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatga 238  Q
    ||||| || || || || ||    ||||| || | ||||||||| ||||||||||||||||| ||||||||||  |  ||||| || ||||| |  ||||    
T  34748785 tcttgcagcgccgacacggcggagctctggaaacggagatcagtcttgaaatcctgagcgatctcacgaaccagacgctggaaggggagtttgcggatga 34748686  T
Q  239 gaagctcagtgctcttctgatactttcggat 269  Q
    | || || ||||||||||| ||||| |||||    
T  34748685 ggagttcggtgctcttctggtacttacggat 34748655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 40036159 - 40036062
Alignment:
Q  46 tggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttg 143  Q
    ||||||||||  |||||||||||||||| ||| ||||| |||||||| |  || || |||||||| | |||||||||||| ||||||||||| |||||    
T  40036159 tggatgtccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttg 40036062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 156
Target Start/End: Complemental strand, 53290832 - 53290749
Alignment:
Q  73 ctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaaca 156  Q
    |||||||||||||| | |||||| || ||||| |||||||||||||||||||| |||||| |  ||| |||||| |||||||||    
T  53290832 ctcttagcatgaatggtacaaaggttagtatcttcaaacaaaccaacaagataagcttcaacgactttttgaagagcagaaaca 53290749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 44771097 - 44771137
Alignment:
Q  169 aatctgagatcagttttgaaatcctgagcgatttcacgaac 209  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  44771097 aatctgagatcggttttgaaatcctgagcgatttcacgaac 44771137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 40035909 - 40035830
Alignment:
Q  184 ttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactt 263  Q
    ||||| |||||||| |||||||||||||| || |||||||| || ||||| || |  |||||||| ||||||||||||||    
T  40035909 ttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatactt 40035830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 40045467 - 40045370
Alignment:
Q  46 tggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttg 143  Q
    ||||||||||  |||||||||||||||| ||| ||||| ||||| || |  || || |||||||| | |||||||||||| || |||||||| |||||    
T  40045467 tggatgtccttgggcataatagtaactcgcttggcatggatagcgcacaagttagtgtcctcaaagagaccaacaagatatgcctcagcagcctcttg 40045370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 17769233 - 17769342
Alignment:
Q  112 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 211  Q
    |||||||||||||| ||| ||   ||||||||||| |||||||||| |||||||| ||||| |||||| |||||||||||||  | |||||| | ||| |    
T  17769233 aaaccaacaagataagctacactggcttcttgaagagcagaaacagtactactctaaaatcggagatctgttttgaaatccttcgtgatttctctaacaa 17769332  T
Q  212 atctttggaa 221  Q
    ||||||||||    
T  17769333 atctttggaa 17769342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 1539185 - 1539294
Alignment:
Q  112 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 211  Q
    |||||||||||||| ||| ||   ||||||||||| | |||||||| |||||||| ||||| |||||| |||||||||| ||  | |||||| | ||| |    
T  1539185 aaaccaacaagataagctacactggcttcttgaagagaagaaacagtactactctaaaatcggagatctgttttgaaatacttcgtgatttctctaacaa 1539284  T
Q  212 atctttggaa 221  Q
    ||||||||||    
T  1539285 atctttggaa 1539294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 7594148 - 7594240
Alignment:
Q  58 ggcataatagtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgca 150  Q
    |||||||| || || |||||||||||||| ||||| ||||| || ||||||||||| ||||| || || || ||||| ||||| |||||||||    
T  7594148 ggcataattgtcaccctcttagcatgaattgcacacagattggtgtcctcaaacaatccaaccaggtaagcctcagctgcttcctgaagtgca 7594240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 27440954 - 27440846
Alignment:
Q  112 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 211  Q
    |||||||||||||| ||| ||   ||||||||||| |||||||||   ||||||| ||||| |||||| |||||||||||||  | |||||| | ||| |    
T  27440954 aaaccaacaagataagctacactggcttcttgaagagcagaaacaatgctactctaaaatcggagatctgttttgaaatccttcgtgatttctctaacaa 27440855  T
Q  212 atctttgga 220  Q
    |||||||||    
T  27440854 atctttgga 27440846  T

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