View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1464_low_29 (Length: 250)
Name: NF1464_low_29
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1464_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 6752976 - 6753201
Alignment:
| Q |
16 |
agtttaacatctcctatcaaactaaaaattcaacaatttggttggtaaataatatcaacaacaaaatctcctatcaaagcatggttggtaac--tttgct |
113 |
Q |
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| T |
6752976 |
agtttaacatctcctatcaaactaaaaattcaacaatttggttggtaaataatatcaacaacaaaatctcctatcaaagcatggttggtaacctctcgct |
6753075 |
T |
|
| Q |
114 |
gtgacaagttgagtcctaactcaatgnnnnnnncatgtttgtaatatatgaatcttacccttcattttcatgtttataacagtagcaatttctgtt-tac |
212 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6753076 |
gtgacaag-tgagtcctaactcaatgtttttttcatgtttgtaatatatgaatcttacccttcattttcatgtttataacagtagcaatttctgttctac |
6753174 |
T |
|
| Q |
213 |
acttttgttttatttggaatgtttcat |
239 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
6753175 |
actttttttttatttggaatgtttcat |
6753201 |
T |
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