View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1464_low_31 (Length: 244)
Name: NF1464_low_31
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1464_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 4917361 - 4917577
Alignment:
| Q |
12 |
atgaagctgttcaaaattttctcaacttaagttttcatgagacgaaggagccaatcaatgtaagctatagtttatcattatcatcagggaaaatcattac |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4917361 |
atgaagctgttcaaaattttctcaacttaagttttcatgagacaaaggagccaatcaatgtaagctatagtttatcattatcatcagggaaaatcattac |
4917460 |
T |
|
| Q |
112 |
caagaaagccaacaaaagggtgcgttgggagagccaaagctgcaagtttataatccaaaagatggatggagctcctgatgaaatattgaaatatgctaca |
211 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4917461 |
caagaaagccaacaaaagggtgcgttgggagagtcaaagctgcaagtttataatccaaaagatggatggagctcctgatgaaatattgaaatatgctaca |
4917560 |
T |
|
| Q |
212 |
tatttttctgaagcaat |
228 |
Q |
| |
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||||||||||||||||| |
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| T |
4917561 |
tatttttctgaagcaat |
4917577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 3013682 - 3013896
Alignment:
| Q |
14 |
gaagctgttcaaaattttctcaacttaagttttcatgagacgaaggagccaatcaatgtaagctatagtttatcattatcatcagggaaaatcattacca |
113 |
Q |
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||||||||||||| | || ||||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
3013682 |
gaagctgttcaaagtcttatcaacttgagtttccatgagacaacagagccaatcaatgtaagctatagtttatcattatcatcaggggacatcattacca |
3013781 |
T |
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| Q |
114 |
agaaagccaacaaaagggtgcgttgggagagccaaagctgcaagtttataatccaaaagatggatggagctcctgatgaaatattgaaatatgctacata |
213 |
Q |
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| T |
3013782 |
agaaatcaaacaaaagggtacgttgggaaagtcaaagttgcaagtttatcatccagaagatggatggagttcttggtgattcattgaagtatgctacaaa |
3013881 |
T |
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| Q |
214 |
tttttctgaagcaat |
228 |
Q |
| |
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||| ||||||||||| |
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| T |
3013882 |
tttctctgaagcaat |
3013896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 2929102 - 2928886
Alignment:
| Q |
12 |
atgaagctgttcaaaattttctcaacttaagttttcatgagacgaaggagccaatcaatgtaagctatagtttatcattatcatcagggaaaatcattac |
111 |
Q |
| |
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||||||||||||||| | || |||||| ||||| |||||||| | ||||| |||||||||||||||||||| ||||| ||||||||| |||||||||| |
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| T |
2929102 |
atgaagctgttcaaagtcttatcaactcgagtttccatgagacaacagagccgatcaatgtaagctatagtttgtcattgtcatcaggggaaatcattac |
2929003 |
T |
|
| Q |
112 |
caagaaagccaacaaaagggtgcgttgggagagccaaagctgcaagtttataatccaaaagatggatggagctcctgatgaaatattgaaatatgctaca |
211 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || ||||||||||||||||| ||||| |||||||| | || ||||| ||| ||||| || ||||||| |
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| T |
2929002 |
aaagaaagcaaacaaaagggtacgttgggaaagtcaaagctgcaagtttatcatccagaagatggaggaagttcctggtgatgcattgagatgtgctaca |
2928903 |
T |
|
| Q |
212 |
tatttttctgaagcaat |
228 |
Q |
| |
|
||| ||||||||||| |
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|
| T |
2928902 |
agtttctctgaagcaat |
2928886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 2945743 - 2945527
Alignment:
| Q |
12 |
atgaagctgttcaaaattttctcaacttaagttttcatgagacgaaggagccaatcaatgtaagctatagtttatcattatcatcagggaaaatcattac |
111 |
Q |
| |
|
||||||||||||||| | || |||||| ||||| |||||||| | || || |||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
2945743 |
atgaagctgttcaaagtcttgtcaactcgagtttccatgagacaacagaaccgatcaatgtaagctatagtttatcattatcatcgggggaaatcattac |
2945644 |
T |
|
| Q |
112 |
caagaaagccaacaaaagggtgcgttgggagagccaaagctgcaagtttataatccaaaagatggatggagctcctgatgaaatattgaaatatgctaca |
211 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || |||||||| |||||||| ||||| ||||| || | || ||| | ||| ||||| ||||||||| |
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| T |
2945643 |
aaagaaagcaaacaaaagggtacgttgggaaagtcaaagctgtaagtttatcatccagaagattgaggaagttcccggtgattctttgaattatgctaca |
2945544 |
T |
|
| Q |
212 |
tatttttctgaagcaat |
228 |
Q |
| |
|
|||| ||||||||||| |
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|
| T |
2945543 |
aatttctctgaagcaat |
2945527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 1508013 - 1508181
Alignment:
| Q |
12 |
atgaagctgttcaaaattttctcaacttaagttttcatgagacgaaggagccaatcaatgtaagctatagtttatcattatcatcagggaaaatcattac |
111 |
Q |
| |
|
||||||||||||||| | ||||||||||||| || |||||||| | ||| ||||||||||||||||||||| | || ||||||| || | |||||||| |
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| T |
1508013 |
atgaagctgttcaaactcttctcaacttaagcttccatgagacaatggaaccaatcaatgtaagctatagtctgccactatcatccggagacatcattac |
1508112 |
T |
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| Q |
112 |
caagaaagccaacaaaagggtgcgttgggagagccaaagctgcaagtttataatccaaaagatggatgg |
180 |
Q |
| |
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|||||||| |||||||||||||||||||| || ||||| | ||||||||| ||||| ||||||||||| |
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|
| T |
1508113 |
aaagaaagcaaacaaaagggtgcgttgggaaagtcaaagttccaagtttatcatccagaagatggatgg |
1508181 |
T |
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