View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1464_low_34 (Length: 235)
Name: NF1464_low_34
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1464_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31121629 - 31121409
Alignment:
| Q |
1 |
aaacaataccttgaaagtgcaaggctaagctcttgcatccattaattggatatttttattaaaagaacgacactcaccgttcaaacatcctccatctacg |
100 |
Q |
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| T |
31121629 |
aaacaataccttgaaagtgcaaggctaagctcttgcatccattaattggatatttttattaaaagaacgacactcaccgttcaaacatcctccatctaca |
31121530 |
T |
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| Q |
101 |
tttattttccatgagcaatctctacaaccatcattttttgcatcgtaaacgtcaagataatgaagattggggtcttgtggccatgtaaaactacagaaga |
200 |
Q |
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| T |
31121529 |
tttattttccatgagcaatctctacaatcgtcattttttgcatcgtaaacgtcaagataatgaagattggggtcttgtggccatgtaaaactacagaaga |
31121430 |
T |
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| Q |
201 |
ataaggtagctatgaaaattg |
221 |
Q |
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||| |||||||||||||||| |
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| T |
31121429 |
atagcgtagctatgaaaattg |
31121409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 6608764 - 6608698
Alignment:
| Q |
143 |
tcgtaaacgtcaagataatgaagattggggtcttgtggccatgtaaaactacagaagaataaggtag |
209 |
Q |
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| T |
6608764 |
tcgtaaatgtcaagataataaacatgggggttttgaggccatgtaaaactgcaggagaataacgtag |
6608698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 9145869 - 9145930
Alignment:
| Q |
143 |
tcgtaaacgtcaagataatgaagattggggtcttgtggccatgtaaaactacagaagaataa |
204 |
Q |
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| T |
9145869 |
tcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcagaagaataa |
9145930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 9180563 - 9180502
Alignment:
| Q |
143 |
tcgtaaacgtcaagataatgaagattggggtcttgtggccatgtaaaactacagaagaataa |
204 |
Q |
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| T |
9180563 |
tcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcagaagaataa |
9180502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 17373706 - 17373743
Alignment:
| Q |
74 |
tcaccgttcaaacatcctccatctacgtttattttcca |
111 |
Q |
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| T |
17373706 |
tcaccgttcaaacatcctccatttaagtttattttcca |
17373743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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