View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1464_low_36 (Length: 229)

Name: NF1464_low_36
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1464_low_36
NF1464_low_36
[»] chr5 (1 HSPs)
chr5 (1-213)||(39809944-39810159)
[»] chr8 (3 HSPs)
chr8 (1-43)||(5069727-5069769)
chr8 (1-45)||(26284791-26284835)
chr8 (3-39)||(30389131-30389167)
[»] chr2 (2 HSPs)
chr2 (1-39)||(12147487-12147525)
chr2 (1-37)||(33087626-33087662)
[»] chr1 (4 HSPs)
chr1 (1-39)||(10199410-10199448)
chr1 (1-43)||(32859944-32859986)
chr1 (1-37)||(15361070-15361106)
chr1 (3-39)||(30815655-30815691)
[»] chr4 (2 HSPs)
chr4 (1-38)||(24929523-24929560)
chr4 (1-41)||(44138768-44138808)
[»] chr3 (2 HSPs)
chr3 (3-39)||(33883752-33883788)
chr3 (3-39)||(39602212-39602248)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 39809944 - 39810159
Alignment:
Q  1 agcttatgaaaataagctgaaaacgatttatgaacatgttataggtctgctttcataaactccttcaaagagtttcgcgagtgtttatgttagtagataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39809944 agcttatgaaaataagctgaaaacgatttatgaacatgttataggtctgctttcataaactccttcaaagagtttcgcgagtgtttatgttagtagataa 39810043  T
Q  101 gctagctagctcaaataagttaatctaaacatacc---ttattattaattgatatctttcctaatattactattgtgaaagctatgatcatatgtatgta 197  Q
    |||||||||||||||||||||||||||  ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39810044 gctagctagctcaaataagttaatctattcataccttattattattaattgatatctttcctaatattactattgtgaaagctatgatcatatgtatgta 39810143  T
Q  198 aatgcaatgtttgatc 213  Q
    ||||||||||||||||    
T  39810144 aatgcaatgtttgatc 39810159  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 5069727 - 5069769
Alignment:
Q  1 agcttatgaaaataagctgaaaacgatttatgaacatgttata 43  Q
    ||||||||||||||||||||||| || ||||||||||||||||    
T  5069727 agcttatgaaaataagctgaaaatgacttatgaacatgttata 5069769  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 26284835 - 26284791
Alignment:
Q  1 agcttatgaaaataagctgaaaacgatttatgaacatgttatagg 45  Q
    |||||||||||||||||||||||| | ||||  ||||||||||||    
T  26284835 agcttatgaaaataagctgaaaacaacttatagacatgttatagg 26284791  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 30389131 - 30389167
Alignment:
Q  3 cttatgaaaataagctgaaaacgatttatgaacatgt 39  Q
    |||||||||||||||||||||| | ||||||||||||    
T  30389131 cttatgaaaataagctgaaaacaacttatgaacatgt 30389167  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 12147487 - 12147525
Alignment:
Q  1 agcttatgaaaataagctgaaaacgatttatgaacatgt 39  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  12147487 agcttatgaaaataaactgaaaacaatttatgaacatgt 12147525  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33087662 - 33087626
Alignment:
Q  1 agcttatgaaaataagctgaaaacgatttatgaacat 37  Q
    |||||||| |||||||||||||||| |||||||||||    
T  33087662 agcttatgtaaataagctgaaaacggtttatgaacat 33087626  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 10199448 - 10199410
Alignment:
Q  1 agcttatgaaaataagctgaaaacgatttatgaacatgt 39  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  10199448 agcttatgaaaataagctgaaaacaacttatgaacatgt 10199410  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32859986 - 32859944
Alignment:
Q  1 agcttatgaaaataagctgaaaacgatttatgaacatgttata 43  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||    
T  32859986 agcttatggaaacaagctgaaaacaatttatgaacatgttata 32859944  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15361070 - 15361106
Alignment:
Q  1 agcttatgaaaataagctgaaaacgatttatgaacat 37  Q
    |||||||||||||||||||||||| | ||||||||||    
T  15361070 agcttatgaaaataagctgaaaacaacttatgaacat 15361106  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 30815691 - 30815655
Alignment:
Q  3 cttatgaaaataagctgaaaacgatttatgaacatgt 39  Q
    ||||||||||||||||||||||  |||||||||||||    
T  30815691 cttatgaaaataagctgaaaacattttatgaacatgt 30815655  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24929523 - 24929560
Alignment:
Q  1 agcttatgaaaataagctgaaaacgatttatgaacatg 38  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  24929523 agcttatggaaataagctgaaaacaatttatgaacatg 24929560  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44138768 - 44138808
Alignment:
Q  1 agcttatgaaaataagctgaaaacgatttatgaacatgtta 41  Q
    |||||||||||||||||||||||| | ||||| ||||||||    
T  44138768 agcttatgaaaataagctgaaaacaaattatgtacatgtta 44138808  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 33883788 - 33883752
Alignment:
Q  3 cttatgaaaataagctgaaaacgatttatgaacatgt 39  Q
    |||||||||||||||||||||| | ||||||||||||    
T  33883788 cttatgaaaataagctgaaaacaacttatgaacatgt 33883752  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 39602248 - 39602212
Alignment:
Q  3 cttatgaaaataagctgaaaacgatttatgaacatgt 39  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  39602248 cttatgaaaataagttgaaaacaatttatgaacatgt 39602212  T

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