View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1464_low_37 (Length: 223)
Name: NF1464_low_37
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1464_low_37 |
 | |
|
| [»] chr6 (30 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 4575026 - 4574819
Alignment:
| Q |
16 |
tgaatgctttctattctttgtttccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactc |
115 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4575026 |
tgaatgctttctattctatgttcccttctctatacacaattggtccattagcttcttttgtaaatcaaagtccacaaaatgacttgacatctttagactc |
4574927 |
T |
|
| Q |
116 |
taatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatgtct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4574926 |
taatctttggaaagaagatactaaatgtcttgaatggattgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatgtct |
4574827 |
T |
|
| Q |
216 |
cgagagaa |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
4574826 |
cgagagaa |
4574819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 4561222 - 4561015
Alignment:
| Q |
16 |
tgaatgctttctattctttgtttccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactc |
115 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4561222 |
tgaatgctttctattctatgttcccttctctatacacaattggtccattagcttcttttgtaaatcaaagtccacaaaatcacttgacatctttagactg |
4561123 |
T |
|
| Q |
116 |
taatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatgtct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4561122 |
taatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaggatctgttgtttatgtaaattttggcagcatcactgttaagtct |
4561023 |
T |
|
| Q |
216 |
cgagagaa |
223 |
Q |
| |
|
| |||||| |
|
|
| T |
4561022 |
caagagaa |
4561015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 39 - 215
Target Start/End: Original strand, 4503834 - 4504010
Alignment:
| Q |
39 |
ccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactctaatctttggaaagaagatacta |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4503834 |
ccttctctatacacaattggtccattagcttcttttgtaaatcaaagtccacaaaatgacttgacatctttagactctaatctttggaaagaagatacta |
4503933 |
T |
|
| Q |
139 |
aatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatgtct |
215 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
4503934 |
aatgtcttgattggcttgaattaaaagaaccaggatctgttgtttatgtaaattttggcagcattacagttatgtct |
4504010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 39 - 223
Target Start/End: Original strand, 4489792 - 4489976
Alignment:
| Q |
39 |
ccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactctaatctttggaaagaagatacta |
138 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||||||| || |||||| |||| ||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4489792 |
ccttctgtatacacaattggcccattttcttcttttttagatcaaattccagaaaatcacttgaaatctttagactctaatctttggaaagaagatacta |
4489891 |
T |
|
| Q |
139 |
aatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatgtctcgagagaa |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4489892 |
aatgtcttgaatggcttgaatcaaaagaaccaggatctgttgtttatgtaaattttggcagcatcactgttatgtctcgagagaa |
4489976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 4266580 - 4266787
Alignment:
| Q |
16 |
tgaatgctttctattctttgtttccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactc |
115 |
Q |
| |
|
|||||||| |||| ||| |||| |||||| ||||||| ||||| ||||| ||||||||| |||||||||||||||||||| ||||| |||||||| | || |
|
|
| T |
4266580 |
tgaatgctctctactctatgttcccttctatatacaccattggcccatttgcttcttttttaaatcaaagtccacaaaatcacttggcatctttaaattc |
4266679 |
T |
|
| Q |
116 |
taatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatgtct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
4266680 |
caatctttggaaagaagatactaaatgtcttgagtggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggtagcatcacagttatgtca |
4266779 |
T |
|
| Q |
216 |
cgagagaa |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
4266780 |
cgagagaa |
4266787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 4481411 - 4481204
Alignment:
| Q |
16 |
tgaatgctttctattctttgtttccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactc |
115 |
Q |
| |
|
||||| || |||||||| | || |||||||||||||| ||||||||||| ||||||||| ||||||||||||||||| || ||||| | | |||||||| |
|
|
| T |
4481411 |
tgaattctctctattctatattcccttctctatacaccattggtccattggcttcttttttaaatcaaagtccacaatatcacttggaaacattagactc |
4481312 |
T |
|
| Q |
116 |
taatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatgtct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4481311 |
taatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaggatctgttgtttatgtaaattttggcagcatcacaattatgtct |
4481212 |
T |
|
| Q |
216 |
cgagagaa |
223 |
Q |
| |
|
| |||||| |
|
|
| T |
4481211 |
caagagaa |
4481204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 39 - 223
Target Start/End: Complemental strand, 3172436 - 3172252
Alignment:
| Q |
39 |
ccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactctaatctttggaaagaagatacta |
138 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||| ||| ||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3172436 |
ccttctctatacacaattggtccgttcgcttcgtttttaagtcaaagtccgcaaaatcacttggcatctttagattctaatctttggaaagaagatacta |
3172337 |
T |
|
| Q |
139 |
aatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatgtctcgagagaa |
223 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
3172336 |
aatgtcttgaatggcttgaaacaaaagaatcaaaatctgttgtttatgtaaattttggcagcatcatagttatgtctcaagagaa |
3172252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 39 - 212
Target Start/End: Complemental strand, 4461818 - 4461645
Alignment:
| Q |
39 |
ccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactctaatctttggaaagaagatacta |
138 |
Q |
| |
|
|||||||||||||| ||||||||| | |||||||| |||||||||||||||||||| || || |||||||| | || |||||||||||||||||||||| |
|
|
| T |
4461818 |
ccttctctatacaccattggtccactttcttcttttataaatcaaagtccacaaaatcacctggcatctttaaattccaatctttggaaagaagatacta |
4461719 |
T |
|
| Q |
139 |
aatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
4461718 |
aatgtcttgaatggcttgaatcaaaagaaccaggatctgttgtctatgtaaattttggcagcatcacagttatg |
4461645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 4458313 - 4458106
Alignment:
| Q |
16 |
tgaatgctttctattctttgtttccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactc |
115 |
Q |
| |
|
||||| || |||| ||| |||| |||||| ||||||| ||||| ||||| ||||||||| |||||||||||||||||||| ||||| |||||||| | || |
|
|
| T |
4458313 |
tgaatactctctactctatgttcccttctatatacaccattggcccatttgcttcttttataaatcaaagtccacaaaatcacttggcatctttaaattc |
4458214 |
T |
|
| Q |
116 |
taatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatgtct |
215 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||| |
|
|
| T |
4458213 |
caatctttggaaagaatatactaaatgtcttgagtggcttgaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacagttatgtct |
4458114 |
T |
|
| Q |
216 |
cgagagaa |
223 |
Q |
| |
|
| |||||| |
|
|
| T |
4458113 |
caagagaa |
4458106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 4514535 - 4514735
Alignment:
| Q |
16 |
tgaatgctttctattctttgtttccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactc |
115 |
Q |
| |
|
|||||||| | |||||| || | |||||||||||||| ||||| ||||| ||||| ||| | |||||||||||||||||| ||||| |||||||| || |
|
|
| T |
4514535 |
tgaatgctctttattctatgctcccttctctatacaccattggcccatttgcttcgtttttgaatcaaagtccacaaaatcacttggaatctttaggttc |
4514634 |
T |
|
| Q |
116 |
taatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatgtct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
4514635 |
caatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaatcaggatctgttgtttatgttaattttggtagcatcacgattatgtct |
4514734 |
T |
|
| Q |
216 |
c |
216 |
Q |
| |
|
| |
|
|
| T |
4514735 |
c |
4514735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 4470512 - 4470314
Alignment:
| Q |
25 |
tctattctttgtttccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactctaatctttg |
124 |
Q |
| |
|
|||||||| | || |||||||||||| | ||||||||| | |||||||| |||||||||||||||||||| | | |||||||| | | |||||||| |
|
|
| T |
4470512 |
tctattctatattcccttctctatacgccattggtccactttcttcttttttaaatcaaagtccacaaaatcatctagcatctttaaatttcaatctttg |
4470413 |
T |
|
| Q |
125 |
gaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatgtctcgagagaa |
223 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |||||| |||| |||||||||| |||||| |
|
|
| T |
4470412 |
gaaagaagatactaaatgtcttgagtggcttgaatcaaaagaaccaggatctgttgtctatgtaaatttcggcagcgtcacagttatgtctccagagaa |
4470314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 34 - 216
Target Start/End: Complemental strand, 4506557 - 4506375
Alignment:
| Q |
34 |
tgtttccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactctaatctttggaaagaaga |
133 |
Q |
| |
|
||||||||||||||||||| ||||| || ||| |||| ||| |||||||||||||||||||| | || || ||||||| || |||||||||||||| || |
|
|
| T |
4506557 |
tgtttccttctctatacactattggccctttaacttcatttgtaaatcaaagtccacaaaatcagtttgcaactttagattcaaatctttggaaagagga |
4506458 |
T |
|
| Q |
134 |
tactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatgtctc |
216 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||| |
|
|
| T |
4506457 |
tactaaatgtctcgaatggctggaatcaaaagaaccggcttctgttgtttatgtgaattttggaagcatcacaattatgtctc |
4506375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 4299235 - 4299440
Alignment:
| Q |
16 |
tgaatgctttctattctttgtttccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactc |
115 |
Q |
| |
|
|||||||| |||||||| |||| |||||| |||| || ||||| || ||| |||| || ||||||||| |||||| ||| ||||| |||||||| || |
|
|
| T |
4299235 |
tgaatgctctctattctatgttcccttctttatatactattggacctttaccttcattattaaatcaaactccacataatcacttggaatctttaggttc |
4299334 |
T |
|
| Q |
116 |
taatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatgtct |
215 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| || || || |||| ||||||||||| |||||||||||| | || |||||| || |
|
|
| T |
4299335 |
caatctttggaaagaagataccaaatgtcttgaatggcttgaatccaaggagccgggatcggttgtttatgtgaattttggcagcgttacagttatgact |
4299434 |
T |
|
| Q |
216 |
cgagag |
221 |
Q |
| |
|
| |||| |
|
|
| T |
4299435 |
ccagag |
4299440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 54 - 202
Target Start/End: Complemental strand, 4598851 - 4598703
Alignment:
| Q |
54 |
attggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactctaatctttggaaagaagatactaaatgtcttgaatggc |
153 |
Q |
| |
|
||||| || ||| |||| ||| |||||||||||| |||||| | ||| ||||||||| | |||||||||||||||||||| || |||||||| |||| |
|
|
| T |
4598851 |
attggccctttatcttcgtttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggc |
4598752 |
T |
|
| Q |
154 |
ttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcat |
202 |
Q |
| |
|
||||||| || |||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
4598751 |
ttgaatccaatgaaccaaggtctgttgtttatgtgaattttgggagcat |
4598703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 4516977 - 4516850
Alignment:
| Q |
78 |
aatcaaagtccacaaaatgacttgacatctttagactctaatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctg |
177 |
Q |
| |
|
||||||||||| |||||| ||||| | ||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| || |||| | | |||| |
|
|
| T |
4516977 |
aatcaaagtccgcaaaataacttggcttctataggttctaatctttggaaagaagatatgaaatgtcttgaatggcttgaatctaaggaacaaggttctg |
4516878 |
T |
|
| Q |
178 |
ttgtttatgtaaattttggcagcatcac |
205 |
Q |
| |
|
| |||||||| |||||||| |||||||| |
|
|
| T |
4516877 |
tagtttatgtgaattttggaagcatcac |
4516850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 4259577 - 4259764
Alignment:
| Q |
25 |
tctattctttgtttccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactctaatctttg |
124 |
Q |
| |
|
|||||||| |||| |||||| |||| | ||||| || ||| |||| || ||||||||| |||||| ||| || || |||| |||| || |||||||| |
|
|
| T |
4259577 |
tctattctatgttcccttctttatatgctattggacctttaccttcattattaaatcaaactccacataatcacctggcatcgttaggttccaatctttg |
4259676 |
T |
|
| Q |
125 |
gaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatg |
212 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || ||||| ||||||||||| || |||||||||||||| || |||||| |
|
|
| T |
4259677 |
gaaagaagataccaaatgtcttgaatggcttgaatttaaggaacctgagtctgttgtttacgtgaattttggcagcattacagttatg |
4259764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 76 - 212
Target Start/End: Original strand, 4256098 - 4256234
Alignment:
| Q |
76 |
taaatcaaagtccacaaaatgacttgacatctttagactctaatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatc |
175 |
Q |
| |
|
||||||||| |||||| | | ||||| |||| |||| || |||||||||||||||||||| || |||||||||||||||||||| || ||||| || |
|
|
| T |
4256098 |
taaatcaaactccacatagtcacttggcatcgttaggttccaatctttggaaagaagataccaagtgtcttgaatggcttgaatccaaggaacctgagtc |
4256197 |
T |
|
| Q |
176 |
tgttgtttatgtaaattttggcagcatcactgttatg |
212 |
Q |
| |
|
||||||||| || |||||||||||||| || |||||| |
|
|
| T |
4256198 |
tgttgtttacgtgaattttggcagcattacagttatg |
4256234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 4580112 - 4579970
Alignment:
| Q |
54 |
attggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactctaatctttggaaagaagatactaaatgtcttgaatggc |
153 |
Q |
| |
|
||||| || ||| |||| ||| |||||||||||||| |||| | |||||||||||| | | ||| |||||||||||||||| || |||||| | |||| |
|
|
| T |
4580112 |
attggccctttatcttcgtttttaaatcaaagtccagaaaaccatttgacatctttaagcaccaatttttggaaagaagataccaagtgtctttattggc |
4580013 |
T |
|
| Q |
154 |
ttgaatcaaaagaaccaagatctgttgtttatgtaaattttgg |
196 |
Q |
| |
|
||||||| || ||||| || |||||||||||||| |||||||| |
|
|
| T |
4580012 |
ttgaatccaaggaacctaggtctgttgtttatgtgaattttgg |
4579970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 4626607 - 4626485
Alignment:
| Q |
78 |
aatcaaagtccacaaaatgacttgacatctttagactctaatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctg |
177 |
Q |
| |
|
|||| |||||||||||| | |||| |||||||| || ||||||||||||||||| || || ||||||||||||||||||| || ||||||| |||| |
|
|
| T |
4626607 |
aatcgaagtccacaaaaccagttgatatctttaggttccaatctttggaaagaagacaccaattgtcttgaatggcttgaattcaaggaaccaaagtctg |
4626508 |
T |
|
| Q |
178 |
ttgtttatgtaaattttggcagc |
200 |
Q |
| |
|
|||||||||| || ||||||||| |
|
|
| T |
4626507 |
ttgtttatgtgaactttggcagc |
4626485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 201
Target Start/End: Complemental strand, 4586294 - 4586169
Alignment:
| Q |
76 |
taaatcaaagtccacaaaatgacttgacatctttagactctaatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatc |
175 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| | |||||||||||||| ||||| || |||||||| |||||||||||||| ||||| || || |
|
|
| T |
4586294 |
taaatcaaagtccacaaaaccacttagcatctttaagtacaaatctttggaaagaggataccaagtgtcttgattggcttgaatcaaaggaaccgaggtc |
4586195 |
T |
|
| Q |
176 |
tgttgtttatgtaaattttggcagca |
201 |
Q |
| |
|
||||||||||| |||||||| |||| |
|
|
| T |
4586194 |
cgttgtttatgtgaattttgggagca |
4586169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 4564325 - 4564233
Alignment:
| Q |
120 |
ctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatg |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| || || || |||| ||||||||||| |||||||| ||||| || |||||| |
|
|
| T |
4564325 |
ctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgggatccgttgtttatgtgaattttggaagcattacagttatg |
4564233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 212
Target Start/End: Original strand, 4613170 - 4613328
Alignment:
| Q |
54 |
attggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactctaatctttggaaagaagatactaaatgtcttgaatggc |
153 |
Q |
| |
|
|||||||| ||| |||| || ||| |||||||||||||||| ||||| || |||| | |||||||||||||||||||| || |||||||| |||| |
|
|
| T |
4613170 |
attggtcctttatcttcacttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataccaagtgtcttgattggc |
4613269 |
T |
|
| Q |
154 |
ttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatg |
212 |
Q |
| |
|
||||||| || ||||| | || ||||||||||| |||||||| ||||| || |||||| |
|
|
| T |
4613270 |
ttgaatccaaggaaccgaagtccgttgtttatgtgaattttgggagcatgaccgttatg |
4613328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 4602400 - 4602311
Alignment:
| Q |
123 |
tggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatg |
212 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||| || || || |||| ||||||||||| |||||||||||||| || |||||| |
|
|
| T |
4602400 |
tggaaagaagatactgagtgtcttgaatggcttgaatccaaggagccgggatccgttgtttatgtgaattttggcagcattacagttatg |
4602311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 4571589 - 4571505
Alignment:
| Q |
117 |
aatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagca |
201 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||||||||||||| ||||| || || ||||||||||| |||||||| |||| |
|
|
| T |
4571589 |
aatctttggaaagaagataacaagtgtcttgattggcttgaatcaaaggaaccgaggtccgttgtttatgtgaattttgggagca |
4571505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 4622798 - 4622656
Alignment:
| Q |
76 |
taaatcaaagtccacaaaatgacttgacatctttagactctaatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatc |
175 |
Q |
| |
|
||||||||| |||||| ||| ||||| ||||| ||| || ||||||||||||||||||| || |||||||| ||||||||||| || ||||| || | |
|
|
| T |
4622798 |
taaatcaaactccacataatcacttggcatctctaggttccaatctttggaaagaagatatcaagtgtcttgagtggcttgaatccaaggaacc-tga-c |
4622701 |
T |
|
| Q |
176 |
tgttgtttatgtaaattttggcagcatcactgttatgtctcgaga |
220 |
Q |
| |
|
| ||||||| || |||||||||||||| || || ||| ||||||| |
|
|
| T |
4622700 |
tcttgtttacgtgaattttggcagcattacagtgatgactcgaga |
4622656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 4557742 - 4557647
Alignment:
| Q |
117 |
aatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatg |
212 |
Q |
| |
|
||||||||||||||||||| || ||||||| ||||||||||| || ||||| || || ||||||||||| |||||||| ||||| || |||||| |
|
|
| T |
4557742 |
aatctttggaaagaagataacaagtgtcttggttggcttgaatccaaggaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatg |
4557647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 4617651 - 4617544
Alignment:
| Q |
105 |
tctttagactctaatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatca |
204 |
Q |
| |
|
|||||||| || || ||||||||||||||||| | |||||||| ||||||||||| || || || |||| ||||||||||| ||||| |||||||| | |
|
|
| T |
4617651 |
tctttagattccaacctttggaaagaagatacagagtgtcttgattggcttgaatccaaggagccgggatcagttgtttatgtgaatttcggcagcatta |
4617552 |
T |
|
| Q |
205 |
ctgttatg |
212 |
Q |
| |
|
| |||||| |
|
|
| T |
4617551 |
cagttatg |
4617544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 4835531 - 4835571
Alignment:
| Q |
118 |
atctttggaaagaagatactaaatgtcttgaatggcttgaa |
158 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
4835531 |
atctttggaaggaagatacaaaatgtcttgaatggcttgaa |
4835571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 4592842 - 4592765
Alignment:
| Q |
123 |
tggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagc |
200 |
Q |
| |
|
||||||||||||||| | |||||| ||||||||||||| || ||| | | || ||||||||||| ||||| |||||| |
|
|
| T |
4592842 |
tggaaagaagatactgagtgtcttaaatggcttgaatcgaaggaatcgggttccgttgtttatgtgaatttcggcagc |
4592765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 4568700 - 4568628
Alignment:
| Q |
78 |
aatcaaagtccacaaaatgacttgacatctttagactctaatctttggaaagaagatactaaatgtcttgaat |
150 |
Q |
| |
|
||||||| ||| ||||| ||||| | ||||||| || ||||||||||||||||||| ||||||||||||| |
|
|
| T |
4568700 |
aatcaaaatccccaaaagcacttggcttctttaggttccaatctttggaaagaagatatgaaatgtcttgaat |
4568628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 24103717 - 24103510
Alignment:
| Q |
16 |
tgaatgctttctattctttgtttccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactc |
115 |
Q |
| |
|
|||||||| |||| ||| |||| |||||| ||||||| ||||| ||||| ||||||||| |||||||||||||||||||| ||||| |||||||| | || |
|
|
| T |
24103717 |
tgaatgctctctactctatgttcccttctatatacaccattggcccatttgcttcttttttaaatcaaagtccacaaaatcacttggcatctttaaattc |
24103618 |
T |
|
| Q |
116 |
taatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatgtct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
24103617 |
caatctttggaaagaagatactaaatgtcttgagtggcttgaatcaaaagaaccaagatcagttgtttatgtaaattttggtagcatcacagttatgtca |
24103518 |
T |
|
| Q |
216 |
cgagagaa |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
24103517 |
cgagagaa |
24103510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 4e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 20863257 - 20863440
Alignment:
| Q |
16 |
tgaatgctttctattctttgtttccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactc |
115 |
Q |
| |
|
|||||| | |||||||| |||| |||||||||||||| ||||| || || | ||||||| |||||||||||||||| ||| ||||| | |||||||| || |
|
|
| T |
20863257 |
tgaatgttctctattctatgttcccttctctatacaccattggcccttttgtttcttttttaaatcaaagtccacagaatcacttggcgtctttagattc |
20863356 |
T |
|
| Q |
116 |
taatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcag |
199 |
Q |
| |
|
| ||||||||||||||| ||| ||||||||| |||||||||||| |||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
20863357 |
aagtctttggaaagaagacactgaatgtcttgcatggcttgaatcgaaagaaccgggatctattgtatatgtaaattttggcag |
20863440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 1674840 - 1674748
Alignment:
| Q |
120 |
ctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatg |
212 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| || ||||| |||| ||||||||||| ||||| || ||||| | ||||||| |
|
|
| T |
1674840 |
ctttggaaagaagatactgagtgtcttgaatggcttgaatccaacgaaccgggatcggttgtttatgtgaatttcggtagcattattgttatg |
1674748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 16685782 - 16685877
Alignment:
| Q |
117 |
aatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatg |
212 |
Q |
| |
|
|||||||||||| ||||||| || |||||||| ||||||||||| || ||||| || || ||||||||||| |||||||| ||||| || |||||| |
|
|
| T |
16685782 |
aatctttggaaataagataccaagtgtcttgattggcttgaatccaaggaaccgagttccgttgtttatgtgaattttgggagcatgacagttatg |
16685877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 3087127 - 3086933
Alignment:
| Q |
27 |
tattctttgtttccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagactctaatctttgga |
126 |
Q |
| |
|
|||||| |||| ||||| |||| || ||||| |||||| |||| | |||||||||| | |||| ||| ||||| ||||||||| || |||||||||| |
|
|
| T |
3087127 |
tattctgtgttcccttcattatataccattggaccattaccttcactactaaatcaaacttcacataatcacttggcatctttaggttccaatctttgga |
3087028 |
T |
|
| Q |
127 |
aagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatgtctcgagag |
221 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| | || |||||||||||||| | |||||||||||| || |||||| ||| |||| |
|
|
| T |
3087027 |
aagaagataccaagtgtcttgaatggcttgaatcaaagggacttgagtctgttgtttatgtgagttttggcagcattacagttatgactcaagag |
3086933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 4101 - 4296
Alignment:
| Q |
14 |
attgaatgctttctattctttgtttccttctctatacacaattggtccattagcttcttttctaaatcaaagtccacaaaatgacttgacatctttagac |
113 |
Q |
| |
|
|||||||||| |||||||| |||| |||||| |||| || ||||| || ||| |||| || ||||||||| |||||| ||| ||| |||||||| |
|
|
| T |
4101 |
attgaatgctctctattctatgttcccttctttatataccattggacctttaacttcattattaaatcaaactccacataatcacta---atctttaggt |
4197 |
T |
|
| Q |
114 |
tctaatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatg |
212 |
Q |
| |
|
|| |||||||||||||||||||| || |||||||| ||||||| ||| || ||||| || ||||||||||| |||||||| ||||| || |||||| |
|
|
| T |
4198 |
tccaatctttggaaagaagataccaagtgtcttgagtggcttgcatccaaggaacctgagtcggttgtttatgtgaattttggaagcattacagttatg |
4296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 1281743 - 1281627
Alignment:
| Q |
105 |
tctttagactctaatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatca |
204 |
Q |
| |
|
|||||||| || || |||||||||||||||| | |||||| ||||||||||||| || ||||| ||||||||||||||||| ||||| || ||||| | |
|
|
| T |
1281743 |
tctttagattccaacctttggaaagaagatatcgagtgtcttcaatggcttgaatcgaaggaaccgagatctgttgtttatgtgaatttcggaagcatta |
1281644 |
T |
|
| Q |
205 |
ctgttatgtctcgagag |
221 |
Q |
| |
|
| |||||| ||| |||| |
|
|
| T |
1281643 |
cagttatgactccagag |
1281627 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 3234 - 3329
Alignment:
| Q |
117 |
aatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatg |
212 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| ||||| || ||||| |||||||||||||| ||||| |||||||| || |||||| |
|
|
| T |
3234 |
aatctttggaaagaagataccaagtgtcttgaatggctcgaatccaaggaacctgagtctgttgtttatgtgaatttcggcagcattacagttatg |
3329 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 77 - 4
Alignment:
| Q |
120 |
ctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaagatctgttgtttatgtaaattt |
193 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| || ||||| |||| ||||||||||| ||||| |
|
|
| T |
77 |
ctttggaaagaagatactgagtgtcttgaatggcttgaatccaacgaaccgggatcggttgtttatgtgaattt |
4 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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