View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1464_low_40 (Length: 209)
Name: NF1464_low_40
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1464_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 11847183 - 11847232
Alignment:
| Q |
16 |
atgtgacaccaataaagtaaagatagaagattgtatggcttaattagtgg |
65 |
Q |
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| T |
11847183 |
atgtgacaccaataaagtaaagataaaagattgtatggcttaattagtgg |
11847232 |
T |
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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 11847325 - 11847372
Alignment:
| Q |
99 |
ggacaaacaatggtcccttataatcatagaacaaaaatacaaattata |
146 |
Q |
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| T |
11847325 |
ggacaaacaatggtcccttataatcatagagcataaatacaaattata |
11847372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 11847342 - 11847375
Alignment:
| Q |
142 |
ttataatcatagaacataaatacaaattatagaa |
175 |
Q |
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| T |
11847342 |
ttataatcatagagcataaatacaaattatagaa |
11847375 |
T |
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