View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1464_low_41 (Length: 207)

Name: NF1464_low_41

Description: NF1464

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1464_low_41

[»] chr3 (5 HSPs)

Alignment Details

Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 5)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 198; E-Value: 1e-108

Query Start/End: Original strand, 10 - 207

Target Start/End: Original strand, 28893899 - 28894096

Alignment:

Q	10	aataatatacagaatgttcaaaagcaaaactcgaacaccaattatcgtcatggcagtatcaaatgcatatgtacgacaccaacataataattgcaaaagt	109	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28893899	aataatatacagaatgttcaaaagcaaaactcgaacaccaattatcgtcatggcagtatcaaatgcatatgtacgacaccaacataataattgcaaaagt	28893998	T

Q	110	aaacggtgaagcaacttaccacaacaccaattatcatcatttgtcaaaaaggaatcatctttccccaggcattcagcatgataggttttaaggcaatt	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28893999	aaacggtgaagcaacttaccacaacaccaattatcatcatttgtcaaaaaggaatcatctttccccaggcattcagcatgataggttttaaggcaatt	28894096	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2

Raw Score: 46; E-Value: 2e-17

Query Start/End: Original strand, 93 - 206

Target Start/End: Original strand, 28903949 - 28904062

Alignment:

Q	93	ataataattgcaaaagtaaacggtgaagcaacttaccacaacaccaattatcatcatttgtcaaaaaggaatcatctttccccaggcattcagcatgata	192	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28903949	ataataaaggcaaaaataaacggtgaagcagcttaccacaacaccacctatcgtcattcttcaaaaaggaagcatcttgttttacacattcagcatgata	28904048	T

Q	193	ggttttaaggcaat	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28904049	ggttttaaggcaat	28904062	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3

Raw Score: 45; E-Value: 8e-17

Query Start/End: Original strand, 102 - 206

Target Start/End: Original strand, 28927055 - 28927159

Alignment:

Q	102	gcaaaagtaaacggtgaagcaacttaccacaacaccaattatcatcatttgtcaaaaaggaatcatctttccccaggcattcagcatgataggttttaag	201	Q
		\|\|\|\|\|\| \|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28927055	gcaaaaataaaagatgaagcagcttaccacaacaccaattattgtcattctccataaaggaagcatcatgacccaggcatttagcatgataggttttaag	28927154	T

Q	202	gcaat	206	Q
		\|\|\|\|\|
T	28927155	gcaat	28927159	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4

Raw Score: 37; E-Value: 0.000000000005

Query Start/End: Original strand, 123 - 207

Target Start/End: Original strand, 28938580 - 28938664

Alignment:

Q	123	acttaccacaacaccaattatcatcatttgtcaaaaaggaatcatctttccccaggcattcagcatgataggttttaaggcaatt	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28938580	acttaccacaacaccaataatcgtcattcttcagaaaggaatcatcttggccaacacaattagcatgataggttttaaggcaatt	28938664	T

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Target: chr3; HSP #5

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 102 - 162

Target Start/End: Original strand, 28917734 - 28917794

Alignment:

Q	102	gcaaaagtaaacggtgaagcaacttaccacaacaccaattatcatcatttgtcaaaaagga	162	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	28917734	gcaaaaataaacggtgaagcagcttaccacaacaccacctattgtcattcgtcaaaaagga	28917794	T

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