View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1464_low_5 (Length: 477)
Name: NF1464_low_5
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1464_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 20516856 - 20517322
Alignment:
| Q |
1 |
cggcacttaagtgtgttggcctcagctcaattgggttgacttggtgagtaacccaattgttttggattgtttggattgaatagctaagttgtagataaaa |
100 |
Q |
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| T |
20516856 |
cggcacttaagtgtgttggcctcaactcaattgggttgacttggtgggtaacccaattgttttggattg---------aatagctaagttgtagataaaa |
20516946 |
T |
|
| Q |
101 |
ttcctttttgctaatagtttagattttctcttaaggaa-tgtgattagtttctatgttatcgaagatgaagt---gtacgtgaaataaggcatataaagt |
196 |
Q |
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|||||||||||||||| |||||||||||| |||||||| ||| | ||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
20516947 |
ttcctttttgctaataatttagattttcttttaaggaaatgtcaatagtttctatgttatcgaagatgaagtagtgtacatgaaataaggcatataaagt |
20517046 |
T |
|
| Q |
197 |
ggatgttatccaaataatagactaattttaaaatgtatgccacatgctaggttacagatataataaattataattaaagtattaaaccaatgaactataa |
296 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| | |
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| T |
20517047 |
ggatgttatccaaataatatactaattttaaaatgtatgccacatgctaggttacaaat---ataaattataattaaagtattaaaccaataaactagag |
20517143 |
T |
|
| Q |
297 |
gaatttgatag---------nnnnnnnnnnngtttgagggaagtgttgttcacttcttttctactatatctatagagaggcatagggaattaatatccaa |
387 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20517144 |
gaatttgatagtattttttttttttttttttgtttgagggaagtgttgttcacttctttactactatatctatagagaggcatagggaattaatatccaa |
20517243 |
T |
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| Q |
388 |
caaaacatacaaataatatatatgctcattaagtgaatcaaaatgaattctgtttgttcacttaccaccctttcccttt |
466 |
Q |
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| T |
20517244 |
caaaacatacaaataatatatatgctcattaagtgaatcaaaatgaattctgtttgttcacttaccatcctttcccttt |
20517322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 20511547 - 20511583
Alignment:
| Q |
216 |
gactaattttaaaatgtatgccacatgctaggttaca |
252 |
Q |
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| T |
20511547 |
gactaattttaaaatatatgccacatgctaggttaca |
20511583 |
T |
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