View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1464_low_7 (Length: 469)
Name: NF1464_low_7
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1464_low_7 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 13 - 469
Target Start/End: Original strand, 38972891 - 38973347
Alignment:
| Q |
13 |
aaaatcaaccgtaaatgaccttgtccgtcgattcaaaatcgaacggctaagacgagttggtgcatgcagtccaaatctatataatgttttgcatatgaag |
112 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38972891 |
aaaatcaaccgtaaatgaccttgtctgtcgattcaaaatcgaacggctaagacgagttggtgcatgcagtccaaatctatacaatgttttgcatatgaag |
38972990 |
T |
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| Q |
113 |
gcaatataggtattacatgctttcctata--tataaaactcttttgataaaagcacacgaattaagaaatcttgtttttactctaaattagtcaacaata |
210 |
Q |
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| T |
38972991 |
gaaatataggtattacatgctttcctatatatataaaactcttttgataaaagcacacgaattaagaaattttatttttactctaaattagtcaacaata |
38973090 |
T |
|
| Q |
211 |
tgcattctcttttcaagattatccttcaattatcaatagagaattagagataaatagttgatttttaattctctacaattaactaaggtatttttgtgaa |
310 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38973091 |
tgcattctcttttcaagattatccatcaattatcaatagagaattagagataaatagttgatttttaattctctacaattaactaaggtatttttgtgaa |
38973190 |
T |
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| Q |
311 |
aaattagttaatgcaccttgatataaatttgaagaggaacttataaaaagtgacaataaatttttgcaaaagagttttataaataagaacagatgtagta |
410 |
Q |
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| T |
38973191 |
aaattagttaatgcaccttgatataaatttgaagaggaacttataaaaagtgacaataaatttttgcaaaagagttttataaataagaacagatgtagta |
38973290 |
T |
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| Q |
411 |
tnnnnnnncatatagtactgtgtatgataggaacaaagagagaaagaagggagtattga |
469 |
Q |
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| T |
38973291 |
t-aaaaaacatatagtactgtgtatgataggaac-aagagagaaagaagggagtattga |
38973347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 395
Target Start/End: Complemental strand, 41821455 - 41821321
Alignment:
| Q |
256 |
agagataaatagttgatttttaattctctacaattaactaa-ggtatttttgtgaaaaattagttaatgcaccttgatataaatttgaagaggaacttat |
354 |
Q |
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||||||||||| ||||||||||| |||| |||||||||||| ||||||| |||||||||||| ||||||||||| || ||||||||| | |||| |
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| T |
41821455 |
agagataaataattgatttttaactctccacaattaactaatggtatttatgtgaaaaattaattaatgcacct-----tatatttgaagatgtttttat |
41821361 |
T |
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| Q |
355 |
aaaaagtgacaataaatttttgcaaaagagttttataaata |
395 |
Q |
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| T |
41821360 |
aaaaa-tgacaataaatttttacaaatgagtcttataaata |
41821321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 194 - 332
Target Start/End: Complemental strand, 25095333 - 25095202
Alignment:
| Q |
194 |
taaattagtcaacaatatgcattctcttttcaagattatccttcaattatcaatagagaattagagataaatagttgatttttaattctctacaattaac |
293 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||| || ||||||||| ||||||||| |
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| T |
25095333 |
taaatttgtcaacaatatacattctcttttcaagattatccttcaattattaa--------gagagataattagttaatctttaattctatacaattaat |
25095242 |
T |
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| Q |
294 |
ta-aggtatttttgtgaaaaattagttaatgcaccttgat |
332 |
Q |
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| T |
25095241 |
taggggtatttttgtgaaaaattaatgaatacaccttgat |
25095202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 410
Target Start/End: Original strand, 30074141 - 30074245
Alignment:
| Q |
302 |
ttttgtgaaaaattagttaatgcaccttgatataaatttgaagaggaacttataaaaagtgacaataaatttttgcaaaagagttttataaataagaaca |
401 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||| ||| ||| ||||||| || ||||||||||| || |
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| T |
30074141 |
ttttgtgaaaaattaattaatgcaccttgatat----ttgaagaggttcttataaaaagggacaacaaaatttggcaaaagggtcttataaataaggacg |
30074236 |
T |
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| Q |
402 |
gatgtagta |
410 |
Q |
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||||||||| |
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| T |
30074237 |
gatgtagta |
30074245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 395
Target Start/End: Complemental strand, 47500910 - 47500662
Alignment:
| Q |
137 |
ctatatataaaactcttttgataaaagcacacgaattaagaaatcttgtttttactctaaattagtcaacaatatgcattctcttttcaagattatcctt |
236 |
Q |
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||||||| || || ||||||||||||||||| ||||||||||| |||||||| | |||||| ||||||||| | |||||||| |||| ||||||||| |
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| T |
47500910 |
ctatatacaagacccttttgataaaagcacaagaattaagaaaa-ttgtttttgcattaaatttgtcaacaatgtaaattctcttctcaaaattatcctt |
47500812 |
T |
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| Q |
237 |
caattatcaatagagaattagagataaatagttgat-ttttaattctctacaattaacta-aggtatttttgtgaaaaatta-gttaatgcaccttgata |
333 |
Q |
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||||||| || |||| |||||| || |||||| |||||| ||||| || |||| || ||||||||||||||||| | |||||||||||||| |
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| T |
47500811 |
caattattaagagag----agagat--atggttgatgttttaaatctcttcatttaattaggggtatttttgtgaaaaaaaatgttaatgcaccttg--- |
47500721 |
T |
|
| Q |
334 |
taaatttgaagaggaacttataaaaagtgacaataaatttttgcaaaagagttttataaata |
395 |
Q |
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|||||||||| ||||||||||| ||||| ||| ||| ||||||| || ||||||||| |
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| T |
47500720 |
---ttttgaagagggtcttataaaaagggacaacaaaatttggcaaaagggtcttataaata |
47500662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 179
Target Start/End: Original strand, 30073982 - 30074025
Alignment:
| Q |
136 |
cctatatataaaactcttttgataaaagcacacgaattaagaaa |
179 |
Q |
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| T |
30073982 |
cctatatataagacccttttgataaaagcacaagaattaagaaa |
30074025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 12994120 - 12994064
Alignment:
| Q |
256 |
agagataaatagttgatttttaattctctacaattaacta-aggtatttttgtgaaa |
311 |
Q |
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||||||||||||||| | ||||||||||||||||||| || || ||||||||||||| |
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| T |
12994120 |
agagataaatagttggtctttaattctctacaattaattatagatatttttgtgaaa |
12994064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 13023244 - 13023208
Alignment:
| Q |
256 |
agagataaatagttgatttttaattctctacaattaa |
292 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||| |
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| T |
13023244 |
agagataaatagttggtttttaattctctacaattaa |
13023208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 51718076 - 51718136
Alignment:
| Q |
351 |
ttataaaaagtgacaataaatttttgcaaaagagttttataaataagaacagatgtagtat |
411 |
Q |
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|||||||||| ||||| ||| ||| |||||||||||||||| ||||||| || ||||||| |
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| T |
51718076 |
ttataaaaagggacaaaaaaatttatcaaaagagttttataattaagaacggaggtagtat |
51718136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 39885152 - 39885200
Alignment:
| Q |
205 |
acaatatgcattctcttttcaagattatccttcaattatcaatagagaa |
253 |
Q |
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||||||| |||||||||| ||| |||||||||||||||| || |||||| |
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| T |
39885152 |
acaatatacattctctttccaaaattatccttcaattattaagagagaa |
39885200 |
T |
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