View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14650_high_1 (Length: 561)

Name: NF14650_high_1
Description: NF14650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14650_high_1
NF14650_high_1
[»] chr2 (5 HSPs)
chr2 (1-546)||(45262099-45262638)
chr2 (300-461)||(27925798-27925954)
chr2 (320-461)||(30546912-30547047)
chr2 (465-546)||(31410399-31410479)
chr2 (482-546)||(30547077-30547140)
[»] chr8 (6 HSPs)
chr8 (465-546)||(24592388-24592469)
chr8 (256-337)||(24592591-24592672)
chr8 (481-546)||(41504834-41504898)
chr8 (306-461)||(28841183-28841333)
chr8 (307-383)||(8882659-8882735)
chr8 (482-546)||(27190144-27190207)
[»] chr7 (3 HSPs)
chr7 (308-384)||(43727226-43727302)
chr7 (495-546)||(23804824-23804875)
chr7 (412-456)||(28041957-28042001)
[»] chr3 (3 HSPs)
chr3 (482-546)||(19153014-19153077)
chr3 (465-547)||(47472741-47472826)
chr3 (424-461)||(24130716-24130753)
[»] chr1 (2 HSPs)
chr1 (465-537)||(31637582-31637653)
chr1 (286-384)||(9636290-9636388)
[»] scaffold0178 (1 HSPs)
scaffold0178 (459-546)||(17099-17185)
[»] scaffold0002 (1 HSPs)
scaffold0002 (465-539)||(435688-435760)
[»] chr6 (2 HSPs)
chr6 (504-546)||(23302902-23302944)
chr6 (465-546)||(25339834-25339912)
[»] chr5 (2 HSPs)
chr5 (504-546)||(4785207-4785249)
chr5 (481-546)||(40813210-40813274)
[»] chr4 (1 HSPs)
chr4 (505-546)||(56039714-56039755)


Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Complemental strand, 45262638 - 45262099
Alignment:
Q  1 tatagcaatgtcattatcatcgaaagaatagattaaatccctcattggtgtgtatccgacagtaatcttactagtagtactaacattcaatgcttattat 100  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45262638 tataccaatgtcattatcattgaaagaatagattaaatccctcattggtgtgtatccgacagtaatcttactagtagtactaacattcaatgcttattat 45262539  T
Q  101 tcttcaggtttggtagattaattatgaaaaatgactagggtttggggnnnnnnnnnntataaatctaaataaatagtatagtactactaacaagattgca 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |           ||||||||||||||||||||||||||||||||| |||||||||    
T  45262538 tcttcaggtttggtacattaattatgaaaaatgactagggtttgtg-aaaaaaaagatataaatctaaataaatagtatagtactactaagaagattgca 45262440  T
Q  201 aagaacttcaaactgagagatcatccaactaagaaattagaattcctctcctaaccaaggacggttttatcatccggtgagtccgggcacgtgtgcggtc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45262439 aagaacttcaaactgagagatcatccaactaagaaattagaattcctctcataaccaaggacggttttatcatccggtgagtccgggcacgtgcgcggtc 45262340  T
Q  301 tcaatccatactttccttatatcactataagaaatttatatgaaatttgacttataataacaactaaaattcgtcactatagggttaatttcactaggta 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||    
T  45262339 tcaatccatactttccttatatcactataagaaatttatatgaaatttgacttatagtaatagctaaaattcgtcattatagggttaatttcactaggta 45262240  T
Q  401 aatataattcgtctgtaattgttaaatggttgtcattgcatgtttttcacctttacatacgtctgtaattttaaggatgtcattttaaaaatatttaagg 500  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45262239 -----aattcgtctgtaattgttaaatggttgtcattgcatgtttttcacctttacatacgtctgtaattttaaggatgccattttaaaaatatttaagg 45262145  T
Q  501 atatctacctacggtcgcagttgtcactaaaacttatcattgtttt 546  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  45262144 atatctacctacggtcgcagttgtcactaaaatttatcattgtttt 45262099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 300 - 461
Target Start/End: Complemental strand, 27925954 - 27925798
Alignment:
Q  300 ctcaatccatactttccttatatcactataagaaatttatatgaaatttgacttataataacaactaaaattcgtcactatagggttaatttcactaggt 399  Q
    ||||| ||||| |||| || ||||  || |||||||||| | |||||||||||| || ||||||| ||||  |||||||||||||  ||||||  ||| |    
T  27925954 ctcaacccatattttctttgtatcgttacaagaaatttagaagaaatttgacttgtagtaacaaccaaaaaccgtcactatagggcaaatttccgtagct 27925855  T
Q  400 aaatataattcgtctgtaattgttaaatggttgtcattgcatgtttttcacctttacatacg 461  Q
    |     ||| ||||||| ||||| ||||||||||||  ||||||||| ||| ||||| ||||    
T  27925854 a-----aatccgtctgtcattgtcaaatggttgtcacggcatgttttccacatttacctacg 27925798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 320 - 461
Target Start/End: Original strand, 30546912 - 30547047
Alignment:
Q  320 tatcactataagaaatttatatgaaatttgacttataataacaactaaaattcgtcactatagggttaatttcactaggtaaatataattcgtctgtaat 419  Q
    |||||||| |||||||||||| |||||||||||| |||| ||| | ||||| |||||||| ||||  |||||   ||| ||     |||| |||||| ||    
T  30546912 tatcactacaagaaatttataagaaatttgacttgtaatgacagccaaaatccgtcacta-agggcaaatttatgtagcta-----aatttgtctgtcat 30547005  T
Q  420 tgttaaatggttgtcattgcatgtttttcacctttacatacg 461  Q
    ||  |||||||||||| |||||||||| ||||||||| ||||    
T  30547006 tgcgaaatggttgtcactgcatgttttccacctttacctacg 30547047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 546
Target Start/End: Complemental strand, 31410479 - 31410399
Alignment:
Q  465 gtaattttaaggatgtcattttaaaaatatttaaggatatctacctacggtcgcagttgtcactaaaacttatcattgtttt 546  Q
    |||||| ||||||  ||||||| |||| ||| | |||| |||||||||||| || | |||||||||||||||||||||||||    
T  31410479 gtaattctaaggagatcatttttaaaacatt-atggatctctacctacggttgcggctgtcactaaaacttatcattgtttt 31410399  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 546
Target Start/End: Original strand, 30547077 - 30547140
Alignment:
Q  482 attttaaaaatatttaaggatatctacctacggtcgcagttgtcactaaaacttatcattgtttt 546  Q
    |||||||||||||| | |||  |||||||||||| |  | |||||||||||||||||||||||||    
T  30547077 attttaaaaatatt-atggacctctacctacggttgtggctgtcactaaaacttatcattgtttt 30547140  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 465 - 546
Target Start/End: Complemental strand, 24592469 - 24592388
Alignment:
Q  465 gtaattttaaggatgtcattttaaaaatatttaaggatatctacctacggtcgcagttgtcactaaaacttatcattgtttt 546  Q
    |||||| |||||||  ||||||||||| |||||||||  |||||||||| | || | ||||||||||| |||||||||||||    
T  24592469 gtaattctaaggataccattttaaaaacatttaaggacctctacctacgattgcggctgtcactaaaatttatcattgtttt 24592388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 337
Target Start/End: Complemental strand, 24592672 - 24592591
Alignment:
Q  256 caaggacggttttatcatccggtgagtccgggcacgtgtgcggtctcaatccatactttccttatatcactataagaaattt 337  Q
    ||||| |||||||| || |||| |||||||||||||||  ||| |||||||||||||||| || ||||| || |||||||||    
T  24592672 caagggcggttttaccacccggcgagtccgggcacgtgcccgggctcaatccatactttctttgtatcagtacaagaaattt 24592591  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 481 - 546
Target Start/End: Original strand, 41504834 - 41504898
Alignment:
Q  481 cattttaaaaatatttaaggatatctacctacggtcgcagttgtcactaaaacttatcattgtttt 546  Q
    ||||||||||| ||| | ||| ||||||||||||| |||| |||||||||||||||||||||||||    
T  41504834 cattttaaaaacatt-acggacatctacctacggttgcagctgtcactaaaacttatcattgtttt 41504898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 461
Target Start/End: Original strand, 28841183 - 28841333
Alignment:
Q  306 ccatactttccttatatcactataagaaatttatatgaaatttgacttataataacaactaaaattcgtcactatagggttaatttcactaggtaaatat 405  Q
    |||||||||  || |||||||| |||||||||||| ||||||||| || || | | |||  |||| ||||||||||| |||||||||  ||| ||         
T  28841183 ccatactttttttgtatcactacaagaaatttataagaaatttgaattttagtgataaccgaaatccgtcactatagagttaatttccgtagcta----- 28841277  T
Q  406 aattcgtctgtaattgttaaatggttgtcattgcatgtttttcacctttacatacg 461  Q
    ||| ||| ||| ||||| |||||| |||||  |||| |||||||||||||| ||||    
T  28841278 aatccgtatgtcattgtcaaatggctgtcacggcatatttttcacctttacctacg 28841333  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 383
Target Start/End: Complemental strand, 8882735 - 8882659
Alignment:
Q  307 catactttccttatatcactataagaaatttatatgaaatttgacttataataacaactaaaattcgtcactatagg 383  Q
    ||||||||| || |||||||| |||||||||| | |||||||||||| || | ||  | ||||| ||||||||||||    
T  8882735 catactttctttgtatcactacaagaaatttacaagaaatttgacttttagtgacggccaaaatccgtcactatagg 8882659  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 546
Target Start/End: Original strand, 27190144 - 27190207
Alignment:
Q  482 attttaaaaatatttaaggatatctacctacggtcgcagttgtcactaaaacttatcattgtttt 546  Q
    |||||||||||||| |||||  |||||||| ||| |  ||||||| |||||||||||||||||||    
T  27190144 attttaaaaatatt-aaggacttctacctatggttgtggttgtcaataaaacttatcattgtttt 27190207  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 384
Target Start/End: Original strand, 43727226 - 43727302
Alignment:
Q  308 atactttccttatatcactataagaaatttatatgaaatttgacttataataacaactaaaattcgtcactataggg 384  Q
    |||||||| || |||| |||||||||||||  | ||||||||||||||| ||||| | ||||| |||||||||||||    
T  43727226 atactttctttgtatcgctataagaaatttgcaagaaatttgacttatagtaacagccaaaatccgtcactataggg 43727302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 546
Target Start/End: Complemental strand, 23804875 - 23804824
Alignment:
Q  495 ttaaggatatctacctacggtcgcagttgtcactaaaacttatcattgtttt 546  Q
    ||||||||||||||||||||  || | | |||||||||||||||||||||||    
T  23804875 ttaaggatatctacctacggctgcggctatcactaaaacttatcattgtttt 23804824  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 28042001 - 28041957
Alignment:
Q  412 tctgtaattgttaaatggttgtcattgcatgtttttcacctttac 456  Q
    ||||| ||||| |||||| ||||| ||||||||||||||||||||    
T  28042001 tctgtcattgtcaaatggctgtcaatgcatgtttttcacctttac 28041957  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 546
Target Start/End: Original strand, 19153014 - 19153077
Alignment:
Q  482 attttaaaaatatttaaggatatctacctacggtcgcagttgtcactaaaacttatcattgtttt 546  Q
    |||||||||| ||| ||||| ||||||||||||| | || | |||||||||||||||||||||||    
T  19153014 attttaaaaacatt-aaggacatctacctacggttgtagatatcactaaaacttatcattgtttt 19153077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 547
Target Start/End: Original strand, 47472741 - 47472826
Alignment:
Q  465 gtaattttaaggatgtcattttaaaaatatt---taaggatatctacctacggtcgcagttgtcactaaaacttatcattgttttt 547  Q
    |||||| |||||||  ||||||||||| |||   ||||||  |||||||||||| || | |||||||||||| |||||||||||||    
T  47472741 gtaattctaaggataccattttaaaaacattatctaaggacctctacctacggttgcggctgtcactaaaacctatcattgttttt 47472826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 461
Target Start/End: Complemental strand, 24130753 - 24130716
Alignment:
Q  424 aaatggttgtcattgcatgtttttcacctttacatacg 461  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  24130753 aaatggttgtcattgcatgttttccacctttacctacg 24130716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 537
Target Start/End: Original strand, 31637582 - 31637653
Alignment:
Q  465 gtaattttaaggatgtcattttaaaaatatttaaggatatctacctacggtcgcagttgtcactaaaacttat 537  Q
    |||||| |||||||  ||||||||||||| | | |||| |||| ||||||| |||||||||||||||||||||    
T  31637582 gtaattctaaggataccattttaaaaataat-atggatctctatctacggttgcagttgtcactaaaacttat 31637653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 384
Target Start/End: Original strand, 9636290 - 9636388
Alignment:
Q  286 ggcacgtgtgcggtctcaatccatactttccttatatcactataagaaatttatatgaaatttgacttataataacaactaaaattcgtcactataggg 384  Q
    ||||| ||| ||| ||||| | |||||||| || ||| |||||||||||||||||  ||| ||||||||  ||||||   |||||| ||||||||||||    
T  9636290 ggcacatgtccgggctcaacctatactttctttgtataactataagaaatttataaaaaaattgacttacgataacagtcaaaatttgtcactataggg 9636388  T

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Target: scaffold0178 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 546
Target Start/End: Original strand, 17099 - 17185
Alignment:
Q  459 acgtctgtaattttaaggatgtcattttaaaaatatttaaggatatctacctacggtcgcagttgtcactaaaacttatcattgtttt 546  Q
    |||| |||||||||||||||  ||||||||| | ||| | |||  |||||||||||| || | | |||||||||||||||||||||||    
T  17099 acgtatgtaattttaaggataccattttaaatacatt-atggacttctacctacggttgccgctatcactaaaacttatcattgtttt 17185  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 539
Target Start/End: Complemental strand, 435760 - 435688
Alignment:
Q  465 gtaattttaaggatgtcattttaaaaatatttaaggatatctacctacggtcgcagttgtcactaaaacttatca 539  Q
    ||||||||||||||  ||||||||||    |||||||  |||||||||||| || ||||||||||||||||||||    
T  435760 gtaattttaaggataccattttaaaaca--ttaaggacctctacctacggttgcggttgtcactaaaacttatca 435688  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 546
Target Start/End: Original strand, 23302902 - 23302944
Alignment:
Q  504 tctacctacggtcgcagttgtcactaaaacttatcattgtttt 546  Q
    |||||||||||| |||| ||||||||||||||||| |||||||    
T  23302902 tctacctacggttgcagctgtcactaaaacttatcgttgtttt 23302944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 546
Target Start/End: Original strand, 25339834 - 25339912
Alignment:
Q  465 gtaattttaaggatgtcattttaaaaatatttaaggatatctacctacggtcgcagttgtcactaaaacttatcattgtttt 546  Q
    |||||| |||| |||||||||||||| |||| |||||  ||||||||| || || | |||||||||||||||||||||||||    
T  25339834 gtaattctaagaatgtcattttaaaa-tatt-aaggacctctacctacagttgc-gctgtcactaaaacttatcattgtttt 25339912  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 546
Target Start/End: Original strand, 4785207 - 4785249
Alignment:
Q  504 tctacctacggtcgcagttgtcactaaaacttatcattgtttt 546  Q
    |||||||||||| | || |||||||||||||||||||||||||    
T  4785207 tctacctacggttgtagctgtcactaaaacttatcattgtttt 4785249  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 546
Target Start/End: Original strand, 40813210 - 40813274
Alignment:
Q  481 cattttaaaaatatttaaggatatctacctacggtcgcagttgtcactaaaacttatcattgtttt 546  Q
    ||||||||||| ||| |||||  |||||||||||| || | |||| ||||||||||||||||||||    
T  40813210 cattttaaaaacatt-aaggacctctacctacggttgcggctgtcgctaaaacttatcattgtttt 40813274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 546
Target Start/End: Complemental strand, 56039755 - 56039714
Alignment:
Q  505 ctacctacggtcgcagttgtcactaaaacttatcattgtttt 546  Q
    ||||||||||| |||| ||||| |||||||||||||||||||    
T  56039755 ctacctacggttgcagctgtcagtaaaacttatcattgtttt 56039714  T

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