View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14650_low_2 (Length: 312)
Name: NF14650_low_2
Description: NF14650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14650_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 16798062 - 16797774
Alignment:
| Q |
8 |
aatatgctgcaaataaatgtaaggaacaagatgttaatgcttttgaaataaatcctccaatggtggtaattaaaggaatactgacgtagaggttaaaact |
107 |
Q |
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| T |
16798062 |
aataagctgcaaataaatgtaaggaacaagatgttaatgcttttgaaataaatcctccaatggtggtaattaaaggaatactgacgtagaggttaaaact |
16797963 |
T |
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| Q |
108 |
ttgagcctcctgcaaactgaataaataaaacactcccaagtgtccatgaaactagtatgacctgattggatagttgtgatagtctagaaccagtcaattc |
207 |
Q |
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| T |
16797962 |
ttgagcctcctgcaaactgaataaataaaacactcccaagtgtccatgaaactagtatgacctgattggatagttgtgatagtctagaaccagtcaattc |
16797863 |
T |
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| Q |
208 |
catatgggtgcaatattggtggttaagaatttgaagaattagtaatttgatgttggaggtgattgaatcgcgaattcagacgagaggag |
296 |
Q |
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| T |
16797862 |
catatgggtgcaatattggtggttaagaatttgatgaattagtaatttgatgttggaggtgattgaatcgcgaattcagacgagaggag |
16797774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 29807994 - 29808220
Alignment:
| Q |
10 |
tatgctgcaaataaatgtaaggaacaagatgttaatgcttttgaaataaatcctccaatggtggtaattaaaggaatactgacgtagaggttaaaacttt |
109 |
Q |
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| T |
29807994 |
tatgctgcaaataaatccagggaacaggatgttaatgcttttgaaataaatcctccaatggtga-aattaaaggaatacttgcatggaggttcaaacttt |
29808092 |
T |
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| Q |
110 |
gagcctcctgcaaactgaataaataaaacactcccaagtgtc---catgaaactag--tatgacctgattggatagttgtgatagtctagaacca----g |
200 |
Q |
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| T |
29808093 |
gagcctcctgcaaactgaataaataaaacact-cctagtgtccctcatgaaactagtctatgaactgattagatagttgtgatactctagaaccagtcgg |
29808191 |
T |
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| Q |
201 |
tcaattccatatgggtgcaatattggtgg |
229 |
Q |
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| T |
29808192 |
tcaattccatacgagtgcaatagtggtgg |
29808220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 50638629 - 50638341
Alignment:
| Q |
8 |
aatatgctgcaaataaatgtaaggaacaagatgttaatgcttttgaaataaatcctccaatggtggtaattaaaggaatactgacgtagaggttaaaact |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50638629 |
aataagctgcaaataaatgtaaggaacaagatgttaatgcttttgaaataaatcctccaatggtggtaattaaaggaatactgacgtagaggttaaaact |
50638530 |
T |
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| Q |
108 |
ttgagcctcctgcaaactgaataaataaaacactcccaagtgtccatgaaactagtatgacctgattggatagttgtgatagtctagaaccagtcaattc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50638529 |
ttgagcctcctgcaaactgaataaataaaacactcccaagtgtccatgaaactagtatgacctgattggatagttgtgatagtctagaaccagtcaattc |
50638430 |
T |
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| Q |
208 |
catatgggtgcaatattggtggttaagaatttgaagaattagtaatttgatgttggaggtgattgaatcgcgaattcagacgagaggag |
296 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50638429 |
catatgggtgcaatattggtggttaagaatttgatgaattagtaatttgatgttggaggtgattgaatcgcgaattcagacgagaggag |
50638341 |
T |
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