View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14651_low_1 (Length: 542)
Name: NF14651_low_1
Description: NF14651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14651_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 38877888 - 38878277
Alignment:
| Q |
1 |
agccagctgtattttgtacattagattagacttaattgataaactaagtatagttagagttagttatgattggttagggacttagggcagttatagttag |
100 |
Q |
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| T |
38877888 |
agccagctgtattttgtacattagattagacttaactgataaactaagtatagttagagttagctatgattggttagggacttagggcagttatagttag |
38877987 |
T |
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| Q |
101 |
ttagggacttttccttaactcacacagtgtatgctggcccaataagaagttttgtaagagagattgaaaagtttctctaatgttgccacatcatcatgat |
200 |
Q |
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| T |
38877988 |
taagggacttttccttcactcacacagtgtatgctggcccaataagaagttttttaagagagattgaaaagtttctctaatgttgccacatcatcgtaat |
38878087 |
T |
|
| Q |
201 |
gcttgcatgagaaccctagagttgccacatagtcaaaatgcaaggcaaaaaagaaatcaagttcattttacattttacatagatagaagatagatagata |
300 |
Q |
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| T |
38878088 |
gcttgcatgagaaccctagagttgccacatagtcaaaatgcaaggcaaagaagaactcaagtt-------cattttacatagatagaagatagatagata |
38878180 |
T |
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| Q |
301 |
cttataatgcttctctgtgtcattcaattcgatacttataatgatagatagatacttataatgtttctctctatactgtaaagttctctatatgtta |
397 |
Q |
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| T |
38878181 |
cttataattcttctctgtgtcgttcaattcgatacttataatgatagatagatacttataatatttctctctataccgtaaagttctctatatgtta |
38878277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 425 - 537
Target Start/End: Original strand, 38878530 - 38878642
Alignment:
| Q |
425 |
aggtttaagcagtaagttacgcaagccttaacaatgattattaaccaaaatataattgttaaataacttatgcacgtcattacttatttcaatgcatttt |
524 |
Q |
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| T |
38878530 |
aggtttaagcagtaagttacgcaagccttgacaatgattattaaccaaaatataattgttaaataacttatgcacgttattacttatttcaatgcatttt |
38878629 |
T |
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| Q |
525 |
aatgatgatgtcc |
537 |
Q |
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|||||| |||||| |
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| T |
38878630 |
aatgattatgtcc |
38878642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 44152181 - 44152105
Alignment:
| Q |
1 |
agccagctgtattttgtacattagatt-agacttaattgataaactaagtatagttagagttagttatgattggtta |
76 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||| | |||||| | ||||||| ||||||||| |
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| T |
44152181 |
agccagctgtattttgtacattagaaccagacttaactgataaactaactctagttacaattagttaagattggtta |
44152105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 40285959 - 40286035
Alignment:
| Q |
1 |
agccagctgtattttgtacattag-attagacttaattgataaactaagtatagttagagttagttatgattggtta |
76 |
Q |
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|||||||||||||||||||||||| | |||||||| ||||||||||| | |||||| ||||||||||||||||||| |
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| T |
40285959 |
agccagctgtattttgtacattagtaccagacttaactgataaactaactctagttacagttagttatgattggtta |
40286035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 5205418 - 5205489
Alignment:
| Q |
7 |
ctgtattttgtacattagattagacttaattgataaactaagtatagttagagttagttatgattggttagg |
78 |
Q |
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|||| |||| ||||||||||| ||||||| ||||||||||| |||||||| | ||||| ||||||||||||| |
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| T |
5205418 |
ctgtgttttatacattagattggacttaactgataaactaactatagttacaattagtcatgattggttagg |
5205489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 19330494 - 19330570
Alignment:
| Q |
1 |
agccagctgtattttgtacattagatt-agacttaattgataaactaagtatagttagagttagttatgattggtta |
76 |
Q |
| |
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||||||||||||| ||||| ||||| |||||||| ||||||||||| | |||||| ||||||||||||||||||| |
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| T |
19330494 |
agccagctgtattctgtacgttagaaccagacttaactgataaactaactctagttacagttagttatgattggtta |
19330570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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