View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14651_low_2 (Length: 442)
Name: NF14651_low_2
Description: NF14651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14651_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 1832420 - 1832633
Alignment:
| Q |
19 |
gaaagttgaggtccaacttggaccagttgaaatctgacctttgatataatattaattaatatagacgattgtgatagacactcaagtacctgatgtataa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1832420 |
gaaagttgaggtccaacttggaccagttgaaatctgacctttgatataatattaattaatatagacgattgtgatagacactcaagtacctgatgtataa |
1832519 |
T |
|
| Q |
119 |
gttaaatactatccaagcctagtgtaagagtgaccacacagtagcaattttatcattggaaaatacaattttaccccttttcatttcacttaagttttcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1832520 |
gttaaatactatccaagcctagtgtaagagtgaccacacagtagcaattttatcattggaaaatacaattttaccccttttcatttcacttaagttttcc |
1832619 |
T |
|
| Q |
219 |
ggcagtaatccata |
232 |
Q |
| |
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|||||||||||||| |
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| T |
1832620 |
ggcagtaatccata |
1832633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 1866863 - 1867076
Alignment:
| Q |
19 |
gaaagttgaggtccaacttggaccagttgaaatctgacctttgatataatattaattaatatagacgattgtgatagacactcaagtacctgatgtataa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1866863 |
gaaagttgaggtccaacttggaccagttgaaatctgacctttgatataatattaattaatatagacgattgtgatagacactcaagtacctgatgtataa |
1866962 |
T |
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| Q |
119 |
gttaaatactatccaagcctagtgtaagagtgaccacacagtagcaattttatcattggaaaatacaattttaccccttttcatttcacttaagttttcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1866963 |
gttaaatactatccaagcctagtgtaagagtgaccacacagtagcaattttatcattggaaaatacaattttaccccttttcatttcacttaagttttcc |
1867062 |
T |
|
| Q |
219 |
ggcagtaatccata |
232 |
Q |
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|||||||||||||| |
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| T |
1867063 |
ggcagtaatccata |
1867076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 345 - 418
Target Start/End: Original strand, 1832729 - 1832802
Alignment:
| Q |
345 |
aaactatacactccaacaacaacaacctcaaatttcaaatattgaacaagaataacatcacaaagttcatctca |
418 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1832729 |
aaactatacactccaacaacaacaacctcaaatttcaaatattgaacaagaataacatcacaaagttcatctca |
1832802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 345 - 418
Target Start/End: Original strand, 1867172 - 1867245
Alignment:
| Q |
345 |
aaactatacactccaacaacaacaacctcaaatttcaaatattgaacaagaataacatcacaaagttcatctca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1867172 |
aaactatacactccaacaacaacaacctcaaatttcaaatattgaacaagaataacatcacaaagttcatctca |
1867245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 326
Target Start/End: Original strand, 1832679 - 1832710
Alignment:
| Q |
295 |
cccaaatgcaaccaattttcaatctctgttta |
326 |
Q |
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|
|||||||||||||||||||||||||||||||| |
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|
| T |
1832679 |
cccaaatgcaaccaattttcaatctctgttta |
1832710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 326
Target Start/End: Original strand, 1867122 - 1867153
Alignment:
| Q |
295 |
cccaaatgcaaccaattttcaatctctgttta |
326 |
Q |
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|
|||||||||||||||||||||||||||||||| |
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|
| T |
1867122 |
cccaaatgcaaccaattttcaatctctgttta |
1867153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 35534313 - 35534251
Alignment:
| Q |
19 |
gaaagttgaggtccaacttggaccagttgaaatctgacctttgatataatattaattaatata |
81 |
Q |
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|||||||||||| |||||||||| |||| || |||||||||||||||| || ||||||||||| |
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| T |
35534313 |
gaaagttgaggttcaacttggactagttaaagtctgacctttgatatattaataattaatata |
35534251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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