View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14651_low_3 (Length: 436)
Name: NF14651_low_3
Description: NF14651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14651_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 27161 - 27532
Alignment:
| Q |
18 |
acagagtgcagacatgaaaataaagaaaatagatgaaaattgtcatttcattttttcctagatacttaacaatcataatgtcaactttcttggatgacta |
117 |
Q |
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| T |
27161 |
acagagtgcagacatgaaaataaagaaaatagatgaaaattatcatttcattttttcctagatacttaacaatcataatgtcaacttttttggatgacta |
27260 |
T |
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| Q |
118 |
aattctgtttgcaggtttctataggtttcctgctgatgattttagaggccttctccgccagacaaatcatggttgatatctcccattccatattggaggg |
217 |
Q |
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| T |
27261 |
aattctgtttgcaggtttctataggtttcctgctgatgattttagaggccttctccgccagacaaatcatggctgatatctcccattccatattggaggg |
27360 |
T |
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| Q |
218 |
ttgttcttcatggccaaggagttcatacagacccttagaagataatagcaatattcttggcttggcctacggctacttgtgtcaaacagcttagaacatt |
317 |
Q |
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| T |
27361 |
ttgttcttcatggccaaggagttcatacagacccttagaagataatagcaatattcttggcttggcctacgcctacttgtgtcaaacagcttagaacatt |
27460 |
T |
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| Q |
318 |
tctaagtttgacttgttacaacttaaaataaacatgtgtccaaagtcattgctgattttacctttgatgact |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27461 |
tctaagtttgacttgttacaacttaaaataaacatgtgtccaaagtcattgctgattttacctttgatgact |
27532 |
T |
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