View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14651_low_5 (Length: 306)
Name: NF14651_low_5
Description: NF14651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14651_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 36119661 - 36119921
Alignment:
| Q |
14 |
gaagcgagttgaattatgggcttcgaaaaatcctgagaagccatgggattggagaaaggacagaagaaactaattaacatcgtcttgaatcacaccagca |
113 |
Q |
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| T |
36119661 |
gaagcgagttggattatgggcttcgaaaaatcccgagaagccatgggattggagaaaggacagaagaaactaattaacaccgtcttgaatcacaccagca |
36119760 |
T |
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| Q |
114 |
gacatgatgttgaagtaaaagcagcattgattaacacaaactgaaatgatgttgaagtgattgcctgattgaaagaaaaaatgcatatgctttgtatata |
213 |
Q |
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| T |
36119761 |
gacatgatgttgaagtaaatgcagcattgattaacacaaactgaaatgatgcggaagtgattgcctgattgaaagaaaaaatgcatatgctttgtatata |
36119860 |
T |
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| Q |
214 |
ttcattcttca--atgtttaattatttgaaaaaccagtacttgaagttgatattttataga |
272 |
Q |
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| T |
36119861 |
ttcattcttcaatatgtttaattatttgaaaaaccagtacttgaagttgatattttataga |
36119921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 36115585 - 36115862
Alignment:
| Q |
14 |
gaagcgagttgaattatgggcttcgaaaaatcctgagaagccatgggattggagaaaggacagaagaaactaattaacatcgtcttgaatcacaccagca |
113 |
Q |
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| T |
36115585 |
gaagcgagttggattatgggcttcgaaaaatcccgagaagccatgggattggagaaaggacagacgaaactaattaacatcgcctcgaatcacaccagca |
36115684 |
T |
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| Q |
114 |
gacatgatgttgaagtaaaagcagcattgattaacacaaactgaaatgatgttgaagtgattgcctgattgaaagaaaaaatgcatatgctttgtatata |
213 |
Q |
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| T |
36115685 |
gaaatgatgatgaagtaattgcagcattgatgagcacaaattgaaatgatgtttaagaaattgcatgattgaaag--aatatgcaaatgccttgtacatc |
36115782 |
T |
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| Q |
214 |
ttcattcttca--atgtttaattatttgaaaaaccagtacttgaagttgatattttatagatgggaagaatgcaaaaaat |
291 |
Q |
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|||||||| | |||||| ||||||| || || |||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
36115783 |
ctcattcttaaatatgtttgattatttaaagaatcagtacttcaagttgatattttatagagaggaagaatgcaaaaaat |
36115862 |
T |
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