View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14652_low_1 (Length: 472)
Name: NF14652_low_1
Description: NF14652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14652_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 22 - 467
Target Start/End: Original strand, 3333061 - 3333492
Alignment:
| Q |
22 |
taatgacgcttacccatttctgcacaaatggtttctcaagtatccatcatatagaacaagagcattttacatagccggagagagctatgcaggtattgga |
121 |
Q |
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|||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3333061 |
taatgatgcttacacatttctgcacaattggtttctcaagtatccatcatatagaacaagagcattttacatagccggagagagctatgcaggtattgga |
3333160 |
T |
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| Q |
122 |
atcaaagttagggtgtctggtattttaaactccgagtatcgcatttgcttcttgatgataaaatttagtcctatgaatagatcttaaaacatgttgtgca |
221 |
Q |
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| T |
3333161 |
atcaaagttagggtgtctggtattttaaactccgagtatcgcatttgcttcttgatgataaaat--------------agatcttaaaacatgttgtgca |
3333246 |
T |
|
| Q |
222 |
ggaaagtatgtaccagagcttgctgaactcatcattgatagaaacaatgacccttcccttcatattgatctcaagggcattttggtatgttcctacaaga |
321 |
Q |
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| T |
3333247 |
ggaaagtatgtaccagagcttgctgaactcatcattgatagaaacaatgacccttcccttcatattgatctcaagggcattttggtatgttcctacaaga |
3333346 |
T |
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| Q |
322 |
tttaaaatctagcttaaagttctagattaaaatcaaagtataaagaatcttagtttaatataaatattagtgagcacaaaataataatggttttannnnn |
421 |
Q |
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| T |
3333347 |
tttaaaatctagcttaaagttctagataaaaatcaaagtataaagaatcttagtttaatataaatatgagtgagcacaaaataataatggttttattttt |
3333446 |
T |
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| Q |
422 |
nngggcagctgtgaaaccctgaaacttcttatgctgaagattggtt |
467 |
Q |
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| T |
3333447 |
ttgggcagctgggaaaccctgaaacttcttatgctgaagattggtt |
3333492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 3340681 - 3340756
Alignment:
| Q |
50 |
tggtttctcaagtatccatcatatagaacaagagcattttacatagccggagagagctatgcaggtattggaatca |
125 |
Q |
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| T |
3340681 |
tggttcctcaagtttccttcatatagaacaagggcattgtacataggaggagagagctatggaggtattgaaatca |
3340756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 3340844 - 3340911
Alignment:
| Q |
243 |
gctgaactcatcattgatagaaacaatgacccttcccttcatattgatctcaagggcattttggtatg |
310 |
Q |
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| T |
3340844 |
gctgaagttatccttgataggaataaagacccttccctacatattgatctcaagggaattttggtatg |
3340911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 466
Target Start/End: Original strand, 3341180 - 3341222
Alignment:
| Q |
424 |
gggcagctgtgaaaccctgaaacttcttatgctgaagattggt |
466 |
Q |
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| T |
3341180 |
gggcaggtgggaaaccctgaaacttcttatgctgaggattggt |
3341222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 185 - 388
Target Start/End: Original strand, 8348919 - 8349122
Alignment:
| Q |
185 |
tttagtcctatgaatagatcttaaaacatgttgtgcaggaaagtatgtaccagagcttgctgaactcatcattgatagaaacaatgacccttcccttcat |
284 |
Q |
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| T |
8348919 |
tttagtcctctgaattgatcataaaacatgttttgcaggaaagtatgtaccagagcttgctgaacttatcattgatagaaacaataacccttcccttcat |
8349018 |
T |
|
| Q |
285 |
attgatctcaagggcattttggtatgttcctacaagatttaaaatctagcttaaagttctagattaaaatcaaagtataaagaatcttagtttaatataa |
384 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||| |||| |
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| T |
8349019 |
attgatctcaagggcattttggtatgttcctacatgatttaaaatctagctttaagttctagataaatatcaaagtataaagaatcttaatttaaaataa |
8349118 |
T |
|
| Q |
385 |
atat |
388 |
Q |
| |
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|||| |
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|
| T |
8349119 |
atat |
8349122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 185 - 388
Target Start/End: Complemental strand, 42820702 - 42820499
Alignment:
| Q |
185 |
tttagtcctatgaatagatcttaaaacatgttgtgcaggaaagtatgtaccagagcttgctgaactcatcattgatagaaacaatgacccttcccttcat |
284 |
Q |
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|||| |||| ||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
42820702 |
tttaatcctctgaattgatcataaaacatgttttgcaggaaagtatgtaccagagcttgctgaacttatcattgatagaaacaataacccttcccttcat |
42820603 |
T |
|
| Q |
285 |
attgatctcaagggcattttggtatgttcctacaagatttaaaatctagcttaaagttctagattaaaatcaaagtataaagaatcttagtttaatataa |
384 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||| |||| |
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| T |
42820602 |
attgatctcaagggcattttggtatgttcctacatgatttaaaatctagctttaagttctagataaatatcaaagtataaagaatcttaatttaaaataa |
42820503 |
T |
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| Q |
385 |
atat |
388 |
Q |
| |
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|||| |
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|
| T |
42820502 |
atat |
42820499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 35794350 - 35794260
Alignment:
| Q |
220 |
caggaaagtatgtaccagagcttgctgaactcatcattgatagaaacaatgacccttcccttcatattgatctcaagggcattttggtatg |
310 |
Q |
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||||||||||||||||||| ||||||||||| ||| |||||| ||||| ||||| || ||| | |||||||||||||| ||||||||||| |
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| T |
35794350 |
caggaaagtatgtaccagaacttgctgaacttatccatgataggaacaaggacccatctctttacattgatctcaagggaattttggtatg |
35794260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 35794502 - 35794421
Alignment:
| Q |
38 |
tttctgcacaaatggtttctcaagtatccatcatatagaacaagagcattttacatagccggagagagctatgcaggtattg |
119 |
Q |
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||||| ||||| ||||| ||||||| ||||||||||||| | | ||||||||||||| ||||| |||||||||||||||| |
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| T |
35794502 |
tttctacacaattggttcctcaagttcccatcatatagaagtaaaacattttacatagcaggagaaagctatgcaggtattg |
35794421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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