View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14652_low_2 (Length: 363)
Name: NF14652_low_2
Description: NF14652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14652_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 37687335 - 37686997
Alignment:
| Q |
8 |
tatccttacgtgagttaactcacgcaaaagaaatagactaacgtcacactcaacacaacaaccaannnnnnnnaacattggaaataaaggtttctagagc |
107 |
Q |
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| T |
37687335 |
tatccttacgtgagttaactcacgcaaaagaaatagactaacgtcgcactcaacacaacaaccaattttttttaacattggaaataaaggtttctagagc |
37687236 |
T |
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| Q |
108 |
atggaagaaagaaacacggttgctgtagaattgaatagcataactttcaattgtaaaccttgttcaattgaaagaatcggagtttctaacattaacctgg |
207 |
Q |
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| T |
37687235 |
atggaagaaagaaacacggttgctgtagaattgaatagcataactttcaattgtaaaccttgttcaattgaaagaatcggagtttctaacattaacctgg |
37687136 |
T |
|
| Q |
208 |
tttctcttctcacttccttgctgtataattgaatagcatacccttccaattgaaagtgagaaagaagccttttgaattgaaattggaattcaaaggttta |
307 |
Q |
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| T |
37687135 |
tttctcttctcacttccttgctgtataattgaatagcatacccttccaattgaaagtgagaaagaagccttttgaattgaaattggaattcaaaggttta |
37687036 |
T |
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| Q |
308 |
tgtttaattggaattggaattagaacctctagaatgacg |
346 |
Q |
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| T |
37687035 |
tgtttaattagaattggaattagaacctctagaatgacg |
37686997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 84 - 328
Target Start/End: Original strand, 33220212 - 33220462
Alignment:
| Q |
84 |
attggaaataaaggtttctagagcatggaagaaagaaacacggttgctgtagaattgaatagcataactttcaattgtaaaccttgttcaattgaaagaa |
183 |
Q |
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| T |
33220212 |
attggaaataaaggtttctagagcatggaagaaagaaacaccgttgctgtagaattgaatagcataactttcaattgtaaaccttgttcaattgaaagaa |
33220311 |
T |
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| Q |
184 |
tcggagtttctaacattaacctggtttctcttctcacttccttgctgtataattgaatagcatacccttccaattgaaagtgagaaagaagccttttgaa |
283 |
Q |
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| T |
33220312 |
tcagagtttctagcattaacctggtttctcttctcacttccttgctgtataattgaatagcatacccttccaattgaaagtgagaaagaagccttttgaa |
33220411 |
T |
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| Q |
284 |
ttga------aattggaattcaaaggtttatgtttaattggaattggaatt |
328 |
Q |
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| T |
33220412 |
ttgaaatctgaattggaattcaaaggtttcttatgaattgaaattggaatt |
33220462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 33220445 - 33220511
Alignment:
| Q |
280 |
tgaattgaaattggaattcaaaggtttatgtttaattggaattggaattagaacctctagaatgacg |
346 |
Q |
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| T |
33220445 |
tgaattgaaattggaattcaaaggtttatgtttaattggaattggaattagaacctttagaatgacg |
33220511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 33220107 - 33220140
Alignment:
| Q |
18 |
tgagttaactcacgcaaaagaaatagactaacgt |
51 |
Q |
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| T |
33220107 |
tgagttaactcacacaaaagaaatagactaacgt |
33220140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 34227322 - 34227351
Alignment:
| Q |
8 |
tatccttacgtgagttaactcacgcaaaag |
37 |
Q |
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| T |
34227322 |
tatccttacgtgagttaactcacgcaaaag |
34227351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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