View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14653_high_5 (Length: 226)
Name: NF14653_high_5
Description: NF14653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14653_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 19274848 - 19274673
Alignment:
| Q |
15 |
tgtgtcaact-aaaaaatatgacccacattgtatagttgggccaaaagactcaacattatttctgcacggtttaaacccatatatcataatgctttc-nn |
112 |
Q |
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| T |
19274848 |
tgtgtcaactcaaaaaatatgagccacattatatagttgggccaaaagactcaacattatttctgcacggtttaaacccatatatcataatgctttcaaa |
19274749 |
T |
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| Q |
113 |
nnnnncaaagaccatatcaattatcataatcttctgttaataagttattaagtggacataaaatgttgtatatatgt |
189 |
Q |
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| T |
19274748 |
aaaaacaaagaccatatcaattatcataatcttctgttaataagttattaa-tggacataaaatgttgtatatatgt |
19274673 |
T |
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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 19272778 - 19272733
Alignment:
| Q |
118 |
caaagaccatatcaattatcataatcttctgttaataagttattaa |
163 |
Q |
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| T |
19272778 |
caaagaccatatcaattatcataatcttctgttaataagatattaa |
19272733 |
T |
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