View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14654_high_2 (Length: 461)
Name: NF14654_high_2
Description: NF14654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14654_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 150 - 301
Target Start/End: Complemental strand, 30214613 - 30214462
Alignment:
| Q |
150 |
atgtctgaatttaattaatagggttgagtgtgcaaatgtccaaatgtgctcctgctgccacaatcgcaattaacaattaatgtgactaatactgctaccc |
249 |
Q |
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| T |
30214613 |
atgtctgaatttaattaatagagttgagtgtgcaaatgtccaaatgtgctcctgctgccacaatcgcaattaacaattaatgtgactaatactgctaccc |
30214514 |
T |
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| Q |
250 |
gtaaggatgttatctgttgccaaatgtttagaccccaactagtttaatttgc |
301 |
Q |
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| T |
30214513 |
ataaggatgttatctgttgccaaatgtttagaccccaactagtttaatttgc |
30214462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 6 - 150
Target Start/End: Complemental strand, 30214782 - 30214638
Alignment:
| Q |
6 |
gtgagaagaacggacgaaggggctgactgaagctatgtatgtatagttgtcattgaatgtagacacaatattcaacttgaattaattgtaagatcattca |
105 |
Q |
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| T |
30214782 |
gtgaaaagaacggacgaaggggctgactgaagctatgtatgtatagttgtcattgaatgcagacacaatattcaactggaattaattgtaagatcattga |
30214683 |
T |
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| Q |
106 |
tttggtgcattttacgtcacagaaaagttcaaaactgagaaaaaa |
150 |
Q |
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| T |
30214682 |
tttggtgcattttacgtcacagaaaagttcaaaactgagagaaaa |
30214638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 376 - 461
Target Start/End: Complemental strand, 30214390 - 30214305
Alignment:
| Q |
376 |
gtattgttttcattatttttaaaaatacatcatcactagttagtaaatatatacgtaataaagaaattagtgagtattttattttc |
461 |
Q |
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| T |
30214390 |
gtattgttttcattatttttaaaaatacatcatcactagttagtaaatatttacgtcataaaaaaattagtgaatattttattttc |
30214305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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