View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14654_high_5 (Length: 417)
Name: NF14654_high_5
Description: NF14654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14654_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 4764504 - 4764905
Alignment:
| Q |
18 |
atgaagaccacaaaattgtttggcatgcaaaataatattggtaaactggggagtgggaaaacctaacatattcaaaatgccactcaaacacttctagata |
117 |
Q |
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| T |
4764504 |
atgaagaccacaaaattgtttggcatgcaaaataatattggtaaactggggagtgggaaaacctaacatattcaaaatgccactcaaacacttctagata |
4764603 |
T |
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| Q |
118 |
aaaggacgattaagaaataaatgatttgaattttatnnnnnnnnttatatgactggnnnnnnntccgccgctcctagggttagtgtcgccgctcccttgt |
217 |
Q |
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| T |
4764604 |
aaaggacgattaagaaataaatgatttgaattttat-aaaaaaattatatcactggaaaaaaagccgccgctcctagggttagcgtcgccactcccttgt |
4764702 |
T |
|
| Q |
218 |
gagggattctgctgtggtttggtgagatatctgctcctcttaacgttttttgtttccacttcatagagataaaaggtgcttccactttcnnnnnnncctc |
317 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4764703 |
gagggattctgttgtggtttggtgagatatctgctcctcttaacgttttttgtttccacttcatagagataaaaggtgcttccactttcttttcttcctc |
4764802 |
T |
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| Q |
318 |
ggatcatgttatgatcccgtgatcc--------------tggcatcatatacattttcattacaagaacaaaaggtgttattatctctcttatgttctcc |
403 |
Q |
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| T |
4764803 |
ggatcatgttatgatcccgtgatccctttcttttccaattggcatcatataca-tttcattacaagaacaaaaggtgttattatctctcttatgttctcc |
4764901 |
T |
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| Q |
404 |
tatg |
407 |
Q |
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|||| |
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| T |
4764902 |
tatg |
4764905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 4670407 - 4670441
Alignment:
| Q |
105 |
acacttctagataaaaggacgattaagaaataaat |
139 |
Q |
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| T |
4670407 |
acacttctagataaaaggacaattaagaaataaat |
4670441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 19061338 - 19061253
Alignment:
| Q |
182 |
ccgccgctcctagggttagtgtcgccgct-cccttgtgagggattctgctgtggtttggtgagatatctgctcctcttaacgtttt |
266 |
Q |
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||||||||||||||||| || ||||||| ||||||||||||||| ||| || ||| | |||||| ||| |||| || |||||||| |
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| T |
19061338 |
ccgccgctcctagggttcttgccgccgctacccttgtgagggattttgccgtcgttcgttgagatttcttctcccctgaacgtttt |
19061253 |
T |
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