View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14654_high_7 (Length: 335)
Name: NF14654_high_7
Description: NF14654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14654_high_7 |
 | |
|
| [»] scaffold0171 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 36734557 - 36734248
Alignment:
| Q |
19 |
ataagaagtttcatgtttcaagttcgccaattatattttaaaaacaaaatcaaaatacga------gtgcatataatgtaaatctgagtcacttgtcact |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36734557 |
ataagaagtttcatgtttcaagttcgccaattatattttaaaaacaaaatcaaaatacgatctagagtgcatataatgtaaatctgagtcacttgtcact |
36734458 |
T |
|
| Q |
113 |
taccaagatgaaggcttttatgttctccattttcaatttgatttcagagctctcatcttcaagaatatccaataaaatatcaagtagatccttaatttga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36734457 |
taccaagatgaaggcttttatgttctccattttcaatttgatttcagagctctcatcttcaagaatatccaataaaatatcaagtagatccttaatttga |
36734358 |
T |
|
| Q |
213 |
ccttctcctccaccaacttcctttctcctcctccttacttcttgatgctccttgataatcctctccatcatagaatcaaacctgtccctaatttccttta |
312 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36734357 |
ccttctcctccaccaacttcttttctcctcctccttacttcttgatgctccttgataatcctctccatcatagaatcaaacctgtccctaatttcctcta |
36734258 |
T |
|
| Q |
313 |
accctttgct |
322 |
Q |
| |
|
|||||||||| |
|
|
| T |
36734257 |
accctttgct |
36734248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 24649 - 24587
Alignment:
| Q |
145 |
tcaatttgatttcagagctctcatcttcaagaatatccaataaaatatcaagtagatccttaa |
207 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||| ||||| ||||||||||| | |||||||| |
|
|
| T |
24649 |
tcaattttatttcactgctctcatcttcatgaatttccaacaaaatatcaagcaaatccttaa |
24587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University