View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14654_high_8 (Length: 314)
Name: NF14654_high_8
Description: NF14654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14654_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 9 - 296
Target Start/End: Complemental strand, 30214364 - 30214062
Alignment:
| Q |
9 |
acatcatcactagttagtaaatatttacgtcatnnnnnnnttagtgagtattttattttct--gtcacaataattcacttttataaatgttccacatann |
106 |
Q |
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| T |
30214364 |
acatcatcactagttagtaaatatttacgtcataaaaaaattagtgaatattttattttctctgtcacaataattcacttttataaatgttccacatatt |
30214265 |
T |
|
| Q |
107 |
nnnnnnnnnnnnggtggaaatcccacgtatttttaataaaaagttaaaataaataa---------------tcataatgtgaacggggcttaatattttc |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30214264 |
tttatttttt--ggtggaaatcccacgtatttttaataaaaagttaaaataaataaagattaaaaaaataatcataatgtgaacggggcttaatattttc |
30214167 |
T |
|
| Q |
192 |
aaggttgtcctgtccatttctgttttactgagtctatcatcatttatgtacaactacaattttaatttgtgttgtaatggaagaggtacatgttggatgg |
291 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30214166 |
aaggatgtcctgtccatttctgttttactgagtctatcatcatttatgtacaactacaattttaatttgtgttgtaatggaagaggtacatgttggatgg |
30214067 |
T |
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| Q |
292 |
aaata |
296 |
Q |
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||||| |
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| T |
30214066 |
aaata |
30214062 |
T |
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