View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14654_low_1 (Length: 602)
Name: NF14654_low_1
Description: NF14654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14654_low_1 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Complemental strand, 36734270 - 36733674
Alignment:
| Q |
1 |
ctaatttcctttaaccctttgctaaacccctggacatcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccccgtaagatgtacagtgt |
100 |
Q |
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| T |
36734270 |
ctaatttcctctaaccctttgctaaacccctggacatcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccccgtaagatgtacagtgt |
36734171 |
T |
|
| Q |
101 |
cttgcaccaacttcctcacctcttcagcttcaccatcattttcactacaagtttggctcataatcatcctcgaaataacgttattcgacaacttcaaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36734170 |
cttgcaccaacttcctcacctcttcagcttcaccatcattttcactacaagtttggctcataatcatccttgaaataacgttattcgacaacttcaaaag |
36734071 |
T |
|
| Q |
201 |
ctctcttccaacatcaacaacctcattctccttccctttcttgagcaaaaaactaacaaaccttgctgtctcttgtctccttaaaggaagaagttgactc |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36734070 |
ctctcttccaacatcaataacctcattctccttccctttcttgagcaaaaaactaacaaaccttgttgtctcttgtctccttaaaggaagaagttgactc |
36733971 |
T |
|
| Q |
301 |
aatgtgttaccaccaagaagttcagacatgcatattttcttgataaatttccaataaggtccatatggagcaaaggaaaaatcttgtgagccatatgtta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36733970 |
aatgtgttaccaccaagaagttcagacatgcatattttcttgataaatttccaataaggtccatatggagcaaaggaaaaatcttgtgagccatatgtta |
36733871 |
T |
|
| Q |
401 |
gataatcaacagctgaactttgaggacggttggagaaataggtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaacacaagg |
500 |
Q |
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| T |
36733870 |
gataatcaacagctgaactttgaggacggttggagaaataggtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaacacaagg |
36733771 |
T |
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| Q |
501 |
catggaacctaggaaaaggtgtattataggtccatattttgttgaaagtttatgaagtccttggtgaggtattgaaccaataaggtgatgatgtcca |
597 |
Q |
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| T |
36733770 |
catggaacctaggaaaaggtgtattataggtccatattttgttgaaagtttgtgaagtccttggtgaggtattgaaccaataaggtgaagatgtcca |
36733674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 556
Target Start/End: Complemental strand, 25168224 - 25168110
Alignment:
| Q |
442 |
gtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaacacaaggcatggaacctaggaaaaggtgtattataggtccatattttg |
541 |
Q |
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| T |
25168224 |
gtttcgtgagttttaagaaactctttggctatttctggatttgaagttactatacaaggtatagagcctaggaaaagttgaattatgggtccatattgaa |
25168125 |
T |
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| Q |
542 |
ttgaaagtttatgaa |
556 |
Q |
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| T |
25168124 |
ttgaaagcttatgaa |
25168110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 536
Target Start/End: Complemental strand, 24939620 - 24939511
Alignment:
| Q |
427 |
cggttggagaaataggtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaacacaaggcatggaacctaggaaaaggtgtatta |
526 |
Q |
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||||||||||| | |||||||||||||||||||||||||| || || ||| | |||| ||| | |||||| | ||| ||||||||||| || |||| |
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| T |
24939620 |
cggttggagaaggaagtttcgtgagttttaagaaactctttggctatttttggacttgaagttactatacaaggaacggagcctaggaaaagttgcatta |
24939521 |
T |
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| Q |
527 |
taggtccata |
536 |
Q |
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| T |
24939520 |
tgggtccata |
24939511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 19053 - 18973
Alignment:
| Q |
36 |
atcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccccgtaagatgtacagtgtcttgcaccaacttcct |
116 |
Q |
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|||||| ||||||||||||||||||||||| || | ||||||| |||| | ||| | |||| | |||||||||| |||||| |
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| T |
19053 |
atcccaattcttaaaaaaccaaataaaatccgacaaattaaacctccctgaaagctctacactatcttgcaccatcttcct |
18973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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