View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14654_low_10 (Length: 278)
Name: NF14654_low_10
Description: NF14654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14654_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 52012302 - 52012067
Alignment:
| Q |
18 |
caaaatacccaaaaaaccctcactcccaatccaaattccatccaacaacaacaacaaccttgttctgttcctccactcagcgatgttgattctatcacaa |
117 |
Q |
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| T |
52012302 |
caaaatacccaaaaaaccctcactcccaatccaaattccatccaacaacaacaac---cttgttctgttcctccactcagcgatgttgattctgtcacaa |
52012206 |
T |
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| Q |
118 |
aacaactcaagggtcacggtttttccgacaaagaaattggtataatcttaaacttaacccnnnnnnnnnnnnnnnnnaatgttccattttctcttgattc |
217 |
Q |
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| T |
52012205 |
aacaactcaagggtcacggtttttccgacaaagaaattggtataatcttaaacttaaccccatcatcatcatcatcaaatgttccattttctcttgattc |
52012106 |
T |
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| Q |
218 |
tcccattcatgaacccttcctcaagagaggaattgaagg |
256 |
Q |
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| T |
52012105 |
tcccattcatgaacccttcctcaagagaggaattgaagg |
52012067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 52002243 - 52002192
Alignment:
| Q |
107 |
ttctatcacaaaacaactcaagggtcacggtttttccgacaaagaaattggt |
158 |
Q |
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| T |
52002243 |
ttctatcacagaacaactaaagggccacggtttttccaacaaagaaattggt |
52002192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 25623806 - 25623747
Alignment:
| Q |
196 |
atgttccattttctcttgattctcccattcatgaacccttcctcaagagaggaattgaag |
255 |
Q |
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| T |
25623806 |
atgttcctttttctcttgaatctcctattcatgaaccctttctcaagagaggaattgaag |
25623747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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