View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14654_low_11 (Length: 256)
Name: NF14654_low_11
Description: NF14654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14654_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 38091934 - 38092165
Alignment:
| Q |
9 |
gtcgacagaaaagaacaagccccattcatcgtccataacgtgtcacttaac---agttcaacgtgtgagtgaccaatgactagctagaacatatacatgt |
105 |
Q |
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| T |
38091934 |
gtcgacacaacagaacaagccccattgatcatccataacgtgtcactttactacagttcaacgtgtgagtgaccaatgactagctagaacatatacatgt |
38092033 |
T |
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| Q |
106 |
acccaaaaataataggaaatattaattcatttatgatttatgatagtagaaggacaaaaacacctacataagataatgcagcctgggcctgggacaaaac |
205 |
Q |
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| T |
38092034 |
acccaaaaataataggaaatattaattcatttatgatttatgatagtagaaggacaaaaacacctacataagataatgcagcctgggcctgggacaaaac |
38092133 |
T |
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| Q |
206 |
aaaaagagcaattgaagagagagtgagagaaa |
237 |
Q |
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| T |
38092134 |
aaacagagcaattgaagagagagtgagagaaa |
38092165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 38094552 - 38094671
Alignment:
| Q |
20 |
agaacaagccccattcatcgtccataacgtgtcac-tta--acagttcaacgtgtgagtgaccaatgactagctagaacatatacatgtacccaaaaata |
116 |
Q |
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| T |
38094552 |
agaacaagtcccattcatcatccataacgtgtcacgttactacaattcaacgtgtaactgaccaatgactaagta-agtacatacatcta-ccaaaaata |
38094649 |
T |
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| Q |
117 |
ataggaaatattaattcattta |
138 |
Q |
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| T |
38094650 |
ataggaaaaataaattcattta |
38094671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 38087522 - 38087587
Alignment:
| Q |
25 |
aagccccattcatcgtccataacgtgtcacttaac---agttcaacgtgtgagtgaccaatgacta |
87 |
Q |
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| T |
38087522 |
aagccccattgatcatccataacgtgtcgctttactacagttcaacgtgtgactgaccaatgacta |
38087587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 38087626 - 38087677
Alignment:
| Q |
150 |
agtagaaggacaaaaaca--cctacataagataatgcagcctgggcctggga |
199 |
Q |
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| T |
38087626 |
agtagaaggacaaaaacacccctacataagataatgctacctgggccaggga |
38087677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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