View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14654_low_13 (Length: 249)
Name: NF14654_low_13
Description: NF14654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14654_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 10764298 - 10764447
Alignment:
| Q |
15 |
ctgagattgttgaaggtattgctaagaataatccttctgttttgaaaatgactcatattgaggcttttgatgctgttgtgaaagaacttggtgatcagaa |
114 |
Q |
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| T |
10764298 |
ctgagattgttgaaggtattgctaacaataatccttctgttttgaaaatgactcatattgaggcttttgatgctgttgttaaagaacttggtgatcagaa |
10764397 |
T |
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| Q |
115 |
tgttagggttttgcttgataatcatgttagtgagcctaagtggtgttgtc |
164 |
Q |
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| T |
10764398 |
tgttagggttttgcttgataatcatgttagtgagcctaagtggtgttgtc |
10764447 |
T |
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Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 5586510 - 5586646
Alignment:
| Q |
26 |
gaaggtattgctaagaataatccttctgttttgaaaatgactcatattgaggcttttgatgctgttgtgaaagaacttggtgatcagaatgttagggttt |
125 |
Q |
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| T |
5586510 |
gaaggtattgctaagtataatccttctattttgaaaacgactcatattgaggcttttgatgctgttgtgaatgaacttgatgctcagaatgtta-tgttt |
5586608 |
T |
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| Q |
126 |
tgcttgataatcatgttagtgagcctaagtggtgttgt |
163 |
Q |
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| T |
5586609 |
tgcttgttaatcatgttagtgagcctaagttgtgttgt |
5586646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 5591471 - 5591607
Alignment:
| Q |
26 |
gaaggtattgctaagaataatccttctgttttgaaaatgactcatattgaggcttttgatgctgttgtgaaagaacttggtgatcagaatgttagggttt |
125 |
Q |
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| T |
5591471 |
gaaggtattgctaagtataatccttctattttgaaaacgactcatattgaggcttttgatgctgttgtgaatgaacttgatgctcagaatgtta-tgttt |
5591569 |
T |
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| Q |
126 |
tgcttgataatcatgttagtgagcctaagtggtgttgt |
163 |
Q |
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| T |
5591570 |
tgcttgttaatcatgttagtgagcctaagttgtgttgt |
5591607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 3534910 - 3534867
Alignment:
| Q |
121 |
ggttttgcttgataatcatgttagtgagcctaagtggtgttgtc |
164 |
Q |
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| T |
3534910 |
ggttttggttgataatcatgttagtgatcctaaatggtgttgtc |
3534867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 38324824 - 38324958
Alignment:
| Q |
29 |
ggtattgctaagaataatccttctgttttgaaaatgactcatattgaggcttttgatgctgttgtgaaagaacttggtgatcagaatgttagggttttgc |
128 |
Q |
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| T |
38324824 |
ggtattgctaagtataatccttcaattttgaaaatgactcacattgaggcttttgatgctgttgtgaacgaacttggtgctcgaaatgttaaagtgttgc |
38324923 |
T |
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| Q |
129 |
ttgataatcatgttagtgagcctaagtggtgttgt |
163 |
Q |
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| T |
38324924 |
ttgataatcatgttagtgagcctaaatggtgttgt |
38324958 |
T |
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