View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14654_low_16 (Length: 233)

Name: NF14654_low_16
Description: NF14654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14654_low_16
NF14654_low_16
[»] chr7 (2 HSPs)
chr7 (19-223)||(38546788-38546992)
chr7 (19-222)||(38553239-38553442)
[»] scaffold1995 (1 HSPs)
scaffold1995 (19-222)||(902-1105)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 38546992 - 38546788
Alignment:
Q  19 caaaaatggagatatcttgtggtccaattctaattcaactccaacatgagtataacaccatggaatatcaatatcttcagcaaactttaataaccacgcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38546992 caaaaatggagatatcttgtggtccaattctaattcaactccaacatgagtataacaccatggaatatcaatatcttcagcaaactttaataaccacgcc 38546893  T
Q  119 ggtgacttctcattaataagaaaccctggtgactttggcaccatatcatgcttattatgaaccctcaaaatcttaacccctaaatgtttctccaacctcc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38546892 ggtgacttctcattaataagaaaccctggtgactttggcaccatatcatgcttattatgaaccctcaaaatcttaacccctaaatgtttctccaacctcc 38546793  T
Q  219 ctttg 223  Q
    |||||    
T  38546792 ctttg 38546788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 38553442 - 38553239
Alignment:
Q  19 caaaaatggagatatcttgtggtccaattctaattcaactccaacatgagtataacaccatggaatatcaatatcttcagcaaactttaataaccacgcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38553442 caaaaatggagatatcttgtggtccaattctaattcaactccaacatgagtataacaccatggaatatcaatatcttcagcaaactttaataaccacgcc 38553343  T
Q  119 ggtgacttctcattaataagaaaccctggtgactttggcaccatatcatgcttattatgaaccctcaaaatcttaacccctaaatgtttctccaacctcc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38553342 ggtgacttctcattaataagaaaccctggtgactttggcaccatatcatgcttattatgaaccctcaaaatcttaacccctaaatgtttctccaatctcc 38553243  T
Q  219 cttt 222  Q
    ||||    
T  38553242 cttt 38553239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1995 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold1995
Description:

Target: scaffold1995; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 1105 - 902
Alignment:
Q  19 caaaaatggagatatcttgtggtccaattctaattcaactccaacatgagtataacaccatggaatatcaatatcttcagcaaactttaataaccacgcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1105 caaaaatggagatatcttgtggtccaattctaattcaactccaacatgagtataacaccatggaatatcaatatcttcagcaaactttaataaccacgcc 1006  T
Q  119 ggtgacttctcattaataagaaaccctggtgactttggcaccatatcatgcttattatgaaccctcaaaatcttaacccctaaatgtttctccaacctcc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1005 ggtgacttctcattaataagaaaccctggtgactttggcaccatatcatgcttattatgaaccctcaaaatcttaacccctaaatgtttctccaatctcc 906  T
Q  219 cttt 222  Q
    ||||    
T  905 cttt 902  T

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