View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14654_low_3 (Length: 432)
Name: NF14654_low_3
Description: NF14654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14654_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 413
Target Start/End: Complemental strand, 43440047 - 43439627
Alignment:
| Q |
13 |
aatatagtgaatgttagagtttattggctataaaa-tacagatttatccaaattaatgaaactaaattattacatttatcaaccgaaataatgaataaaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43440047 |
aatatagtgaatgttagagtttattggctataaaaatacaaatttatccaaattaatgaaactaaattattacatttaccaaccgaaataatgaataaaa |
43439948 |
T |
|
| Q |
112 |
tacggacttcgaacaacgcatttaaacaaaatatatacttttatata----------aatgaaactcttgattgcggagtgtacgagacttcttttgtta |
201 |
Q |
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| T |
43439947 |
tacggaattcgaacaacgcatttaaacaaaatatatacttttatatacttttatataaatgaaactcttgattgcggagtgtacgagacttcttttttta |
43439848 |
T |
|
| Q |
202 |
ctttgtttaagctatcgtattgagttcattagagaacaagctaacatgctcattaatttgtaaatgcagcacacttaa--tttctaaaaataaattatag |
299 |
Q |
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| T |
43439847 |
ctttgtttaagctctcgtattgagttcattagagaacaagctaacatgctcattaatttgtaaatgcagaacacttaatttttctaaaaataaattatat |
43439748 |
T |
|
| Q |
300 |
tattgtt------tataaataaaatagaagatgaaaccgaatccaacaattataataacataag-nnnnnnnnagagataattataataacataagatga |
392 |
Q |
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| || || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43439747 |
tgttttttatttctataaataaaatagaagatgaaaccgaatccaacaattataataacataagtttttttttagagataattataataacataagatga |
43439648 |
T |
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| Q |
393 |
tggtggatgttggcataagag |
413 |
Q |
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| T |
43439647 |
tggtggatgttggcataagag |
43439627 |
T |
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