View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14654_low_4 (Length: 428)
Name: NF14654_low_4
Description: NF14654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14654_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 3 - 412
Target Start/End: Original strand, 43180070 - 43180479
Alignment:
| Q |
3 |
gtgagatgaatgcaaatccaaatagaaactccgctcgtggatttgatgtcatcgacaacataaagacagccgtagagaacgtatgccccggagttgtatc |
102 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43180070 |
gtgagaagaatgcaaatccaaatagaaactccgctcgtggatttgatgtcatcgacaacataaagacagccgtagagaacgtatgccccggagttgtatc |
43180169 |
T |
|
| Q |
103 |
atgtgctgatatcctagccattgctgccgcagactctgttgcaattgtaagtgccgttatatatcaatgaattaattaaccaatcaaaatctaactagtg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43180170 |
atgtgctgatatcctagccattgctgccgcagactctgttgcaattgtaagtgctgttatatatcaatgaattaattaaccaatcaaaatctaaccagtg |
43180269 |
T |
|
| Q |
203 |
cactaaccatgcaaatgttgtgttgtttagcttggaggtccaacctggaatgtaaaacttggaagaagagatgctaaaacggctagtcaatccgctgcta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43180270 |
cactaaccatgcaaatgttgtgttgtttagcttggaggtccaacctggaatgtaaaacttggaagaagagatgctaaaacggctagtcaatccgctgcta |
43180369 |
T |
|
| Q |
303 |
acactgccatcccggcaccaacttccaacctcaatacactcacctcaatgtttagcgccgttggtctttctagcaaagatttggtcacattgtcaggtat |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43180370 |
acactgccatcccggcaccaacttccaacctcaatacactcacctcaatgtttagcgccgttggtctttctagcaaagatttggtcacattgtcaggtat |
43180469 |
T |
|
| Q |
403 |
agttatattg |
412 |
Q |
| |
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|||||||||| |
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| T |
43180470 |
agttatattg |
43180479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 230 - 400
Target Start/End: Original strand, 43194644 - 43194814
Alignment:
| Q |
230 |
tagcttggaggtccaacctggaatgtaaaacttggaagaagagatgctaaaacggctagtcaatccgctgctaacactgccatcccggcaccaacttcca |
329 |
Q |
| |
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|||||||| || ||||||||||| |||||||||||||||||||| || || |||||||||||||| ||||||||||| || ||||||||||||||||| | |
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| T |
43194644 |
tagcttggtggcccaacctggaacgtaaaacttggaagaagagacgccaagacggctagtcaatctgctgctaacaccgcaatcccggcaccaacttcaa |
43194743 |
T |
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| Q |
330 |
acctcaatacactcacctcaatgtttagcgccgttggtctttctagcaaagatttggtcacattgtcaggt |
400 |
Q |
| |
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|||| ||||||||||||||||||||||| || ||||||||||| ||||| || |||||||||||||||||| |
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| T |
43194744 |
accttaatacactcacctcaatgtttagtgctgttggtctttccagcaaggacttggtcacattgtcaggt |
43194814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 43194364 - 43194530
Alignment:
| Q |
14 |
gcaaatccaaatagaaactccgctcgtggatttgatgtcatcgacaacataaagacagccgtagagaacgtatgccccggagttgtatcatgtgctgata |
113 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||| || || ||||||||||||||||||| |
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| T |
43194364 |
gcaaatccgaatagaaactctgctcgtggatttgatgtcattgacaacattaagacagccgtagagaatgtatgtcctggcgttgtatcatgtgctgata |
43194463 |
T |
|
| Q |
114 |
tcctagccattgctgccgcagactctgttgcaattgtaagtgccgttatatatcaatgaattaatta |
180 |
Q |
| |
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|||| ||||| |||||||| ||||| |||||||| ||||||| || |||||||||||||||||||| |
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|
| T |
43194464 |
tccttgccatcgctgccgcggactccgttgcaatcgtaagtgtagtcatatatcaatgaattaatta |
43194530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 43188937 - 43189093
Alignment:
| Q |
41 |
ggatttgatgtcatcgacaacataaagacagccgtagagaacgtatgccccggagttgtatcatgtgctgatatcctagccattgctgccgcagactctg |
140 |
Q |
| |
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||||| |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | |
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| T |
43188937 |
ggattcgatgtcattgacaacataaagacggcggtagagaacgtatgccccggagttgtatcatgtgctgatatccttgccattgctgccacagactccg |
43189036 |
T |
|
| Q |
141 |
ttgcaattgtaag-----tgccgttatatatcaatgaattaattaaccaatcaaaat |
192 |
Q |
| |
|
||||||||||||| || || |||||||||||||||||||||||||||||||| |
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|
| T |
43189037 |
ttgcaattgtaagtatgttgtagtcatatatcaatgaattaattaaccaatcaaaat |
43189093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 230 - 401
Target Start/End: Original strand, 43189149 - 43189320
Alignment:
| Q |
230 |
tagcttggaggtccaacctggaatgtaaaacttggaagaagagatgctaaaacggctagtcaatccgctgctaacactgccatcccggcaccaacttcca |
329 |
Q |
| |
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|||||||| || ||||||||||||||||||||||||||||||||||| | ||| ||||||||||| | ||| |||||||||||||| ||||||||||| |
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| T |
43189149 |
tagcttggtggcccaacctggaatgtaaaacttggaagaagagatgccacaactgctagtcaatctgatgcgaacactgccatcccaagaccaacttcca |
43189248 |
T |
|
| Q |
330 |
acctcaatacactcacctcaatgtttagcgccgttggtctttctagcaaagatttggtcacattgtcaggta |
401 |
Q |
| |
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|||| |||| ||||||||||||||||| ||||||||||| | ||| || || ||| |||||||||||| |
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| T |
43189249 |
accttaatatactcacctcaatgtttaagaatgttggtctttccaccaaggacttagtcgcattgtcaggta |
43189320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 402
Target Start/End: Original strand, 36190635 - 36190806
Alignment:
| Q |
231 |
agcttggaggtccaacctggaatgtaaaacttggaagaagagatgctaaaacggctagtcaatccgctgctaacactgccatcccggcaccaacttccaa |
330 |
Q |
| |
|
|||||||||| ||||| ||| |||| |||||||||||||||||||| | ||| |||||| |||| ||||| |||| || |||||| ||||| ||||| | |
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| T |
36190635 |
agcttggaggcccaacatgggatgtgaaacttggaagaagagatgcaagaacagctagtaaatcagctgcaaacaatgacatcccagcacccacttcaag |
36190734 |
T |
|
| Q |
331 |
cctcaatacactcacctcaatgtttagcgccgttggtctttctagcaaagatttggtcacattgtcaggtat |
402 |
Q |
| |
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|||||| ||||| ||||| ||||| || |||||||||| | ||| ||||||||| ||||||| ||||| |
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| T |
36190735 |
cctcaaccaactcatctcaaggtttaatgctcttggtctttccaccaaggatttggtcgcattgtctggtat |
36190806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 47052589 - 47052553
Alignment:
| Q |
84 |
tatgccccggagttgtatcatgtgctgatatcctagc |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |
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|
| T |
47052589 |
tatgccccggagttgtctcatgtgctgacatcctagc |
47052553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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