View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14655_high_2 (Length: 568)
Name: NF14655_high_2
Description: NF14655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14655_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 45073976 - 45073677
Alignment:
| Q |
19 |
gatggcgtgtgttcaagagaatgcgaatgatgatgagtggggttcagagccttctgccgatgtggcagttgcggaggtgatagtgacagatattgagaca |
118 |
Q |
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| T |
45073976 |
gatggcgtatgttcaagagaatgcgaatgatgatgagtggggttcagagccttctgccgatgtggcagttgcggaggtgatagtgacagatattgagacg |
45073877 |
T |
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| Q |
119 |
gagaagctaaagaaggacttggttggtttgttttatgggactgatcatggattgaaagccgcgagtgagacaagagcggagatttttgagcttattagtc |
218 |
Q |
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| T |
45073876 |
gagaagctgaagaaggacttggttggtttgttttatgggactgatcatggatcgaaagccgcgagtgagacaagagcggagatttttgagcttattagtc |
45073777 |
T |
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| Q |
219 |
agctcgaggctaagtttcccacccctgcttccactgatgccttgagtttgctcgatggaaaatggattcttgcgtaagcaaattcgttttactaactttc |
318 |
Q |
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| T |
45073776 |
agctcgaggctaagtttcccacccctgcttccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaagcaaattcgttttactaactttc |
45073677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 385 - 565
Target Start/End: Complemental strand, 45073609 - 45073422
Alignment:
| Q |
385 |
gttagacaatgatttgtgtttggaagggaacttatcatgttctgctta-------cgttaacttagtttgtgttctgcagctaacaaactcatggttgga |
477 |
Q |
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| T |
45073609 |
gttagacaatgatttgtgtttggaagggaacttatcatgttctgcttattattgacgttaacttagtttgtgttctgcagctaacaaactcatggttgga |
45073510 |
T |
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| Q |
478 |
tttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatct |
565 |
Q |
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| T |
45073509 |
tttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatct |
45073422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 45 - 318
Target Start/End: Complemental strand, 8880811 - 8880538
Alignment:
| Q |
45 |
atgatgatgagtggggttcagagccttctgccgatgtggcagttgcggaggtgatagtgacagatattgagacagagaagctaaagaaggacttggttgg |
144 |
Q |
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| T |
8880811 |
atgatgatgagtggggttcagagccttctgccgatgtggcagttgcggaggtgatagtgccagaaagtgagacggagaagctgaagaaggacttggttgg |
8880712 |
T |
|
| Q |
145 |
tttgttttatgggactgatcatggattgaaagccgcgagtgagacaagagcggagatttttgagcttattagtcagctcgaggctaagtttcccacccct |
244 |
Q |
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|| ||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
8880711 |
ttccttttatgggactgctcgtggattgaaagcggcgagtgagacaagagcggagatttttgagcttattagtcagctcgaggctaagaatccaaccccc |
8880612 |
T |
|
| Q |
245 |
gcttccactgatgccttgagtttgctcgatggaaaatggattcttgcgtaagcaaattcgttttactaactttc |
318 |
Q |
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| T |
8880611 |
gcttccactgatgctttgagtttgctcgatggaaaatggattcttgcgtaagcaaattcgttttactaactttc |
8880538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 8884846 - 8884662
Alignment:
| Q |
112 |
tgagacagagaagctaaagaaggacttggttggtttgttttatgggactgatcatggattgaaagccgcgagtgagacaagagcggagatttttgagctt |
211 |
Q |
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|||||| |||||||| ||||||| |||||||||| ||||||||||||||||| |||||||||||| ||||||| || ||||| |||||| |||||||| |
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| T |
8884846 |
tgagacggagaagctgaagaaggcgttggttggttcgttttatgggactgatcgtggattgaaagcgacgagtgaaactagagctgagattgttgagctt |
8884747 |
T |
|
| Q |
212 |
attagtcagctcgaggctaagtttcccacccctgcttccactgatgccttgagtttgctcgatggaaaatggattcttgcgtaag |
296 |
Q |
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| T |
8884746 |
attactcagctggaagctaagaatcccacacctgcttccactgatgccttgagtttgctcaatggaaaatggattcttgcgtaag |
8884662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 385 - 565
Target Start/End: Complemental strand, 8880468 - 8880281
Alignment:
| Q |
385 |
gttagacaatgatttgtgtttggaagggaacttatcatgttctgcttac-------gttaactt-agtttgtgttctgcagctaacaaactcatggttgg |
476 |
Q |
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|||||||||||||||||||||||||||||| || |||| ||||||||| |||||||| || ||||||||||||||||||||||| || ||||| |
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| T |
8880468 |
gttagacaatgatttgtgtttggaagggaa-ttctcatattctgcttattattaatgttaactttagcttgtgttctgcagctaacaaacttatagttgg |
8880370 |
T |
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| Q |
477 |
atttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatct |
565 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| || |||||||||||||||||| |
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| T |
8880369 |
atttattccgcaggtatacatcctatgcaggtttatttccattgttgtcaagcgggctactgccattactcgaggttgaagaattatct |
8880281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 448 - 565
Target Start/End: Complemental strand, 8884201 - 8884081
Alignment:
| Q |
448 |
tgttctgcagctaacaaactcatggttggatttat---tccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccattt |
544 |
Q |
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|||||||||||||| |||||| ||||| ||||| | || |||||||||||||| ||| ||||||||||||||||| || || || ||||||||||| |
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| T |
8884201 |
tgttctgcagctaataaactcgtggtttgatttgtggttcttcaggtatacatcctttgccggtttatttccattgctttcgagcggactactgccatta |
8884102 |
T |
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| Q |
545 |
cttgaggttgaagaattatct |
565 |
Q |
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||| |||||||||| ||||| |
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| T |
8884101 |
cttacggttgaagaaatatct |
8884081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 8884923 - 8884873
Alignment:
| Q |
47 |
gatgatgagtggggttcagagccttctgccgatgtggcagttgcggaggtg |
97 |
Q |
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||||||||||||||| ||||||||||||| | ||| || |||||||||||| |
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| T |
8884923 |
gatgatgagtggggtccagagccttctgctggtgtcgcggttgcggaggtg |
8884873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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