View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14655_high_3 (Length: 530)
Name: NF14655_high_3
Description: NF14655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14655_high_3 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 102 - 516
Target Start/End: Complemental strand, 9360219 - 9359809
Alignment:
| Q |
102 |
cacacttcacttttggaacaaaagatatatcctgctgctatgcgatttgttcatgaacctaagggaagtactatgcatgcttgaggattatataatccag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
9360219 |
cacacttcacttttggaacaaaagatatatcctgct---atgcgatttgtttatgaacctatgggaagtactatgcatgctggaggattatataatccag |
9360123 |
T |
|
| Q |
202 |
aagaataattatttatatataagtttaaagatacgtattaagtttagagatatatacaaagaatttcccatttttaccattaaacaatagaatttcccat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9360122 |
aagaataattatttatatataagtttaaagatacgtattaagtttagagatatatacaaagaatttcccatttttaccattaaacaatagaatttcccat |
9360023 |
T |
|
| Q |
302 |
ttcagaatctcaacaataataatgtggagtggcttaaactttctattttttggtcattgctactatctttcttccattgaaaatcatgctatgagtatcc |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
9360022 |
ttcagaatctcaacaataataatgtggagtggcttaaactttctattttttggtcattgctactatctttcttccattgagaatcatgatatgagtatcc |
9359923 |
T |
|
| Q |
402 |
tatttcttttctctttctaaaatgctacaatatgaatctgtcaatgtgnnnnnnntaaattaataccagtaaaagagaaacaactttaacttataagaaa |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
9359922 |
tatttcttttctctttctaaaatgctacaatatgaatctgtcaatgtgaaaaaaa-aaattaataccagtaaaaaagaaacagctttaacttataagaaa |
9359824 |
T |
|
| Q |
502 |
caacaatacaatgat |
516 |
Q |
| |
|
||||||||||||||| |
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|
| T |
9359823 |
caacaatacaatgat |
9359809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 9360398 - 9360335
Alignment:
| Q |
22 |
aaaccaattgttagagattccacattgaggcttaaaggaagttattcaattaatagcttagaac |
85 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9360398 |
aaaccacttgttagagattccacattgaggcttaaaggaagtaattcaattaatagcttagaac |
9360335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 102 - 516
Target Start/End: Original strand, 16469290 - 16469702
Alignment:
| Q |
102 |
cacacttcacttttggaacaaaagatatatcctgctgctatgcgatttgttcatgaacctaagggaagtactatgcatgcttgaggattatataatccag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
16469290 |
cacacttcacttttggaacaaaagatatatcctgctgctatgcgatttgttcatgaacctaagggaagtactatgcatgccggaggattatataatccag |
16469389 |
T |
|
| Q |
202 |
aagaataattatttatatataagtttaaagatacgtattaagtttagagatatatacaaagaatttcccatttttaccattaaacaatagaatttcccat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16469390 |
aagaataattatttatatataagtttaaagatacgtattaagtttagagatatatacaaagaatttcccatttttaccattaaacaatagaatttcccat |
16469489 |
T |
|
| Q |
302 |
ttcagaatctcaacaataataatgtggagtggcttaaactttctattttttggtcattgctactatctttcttccattgaaaatcatgctatgagtatcc |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
16469490 |
ttcagaatctcaacaataataatgtggagtggcttaaactttctattttttggtcattgctactatctttcttccattgagaatcatgctatgagtatcc |
16469589 |
T |
|
| Q |
402 |
tatttcttttctctttctaaaatgctacaatatgaatctgtcaatgtgnnnnnnntaaattaataccagtaaaagagaaacaactttaacttataagaaa |
501 |
Q |
| |
|
|| | |||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
16469590 |
ta--taaattctctttctgaaatgctacaatatgaatctgtcaatgtgaaaaaaataaattaataccggtaaaagagaaacagctttaacttataagaaa |
16469687 |
T |
|
| Q |
502 |
caacaatacaatgat |
516 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
16469688 |
caataatacaatgat |
16469702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 102 - 516
Target Start/End: Original strand, 16473864 - 16474273
Alignment:
| Q |
102 |
cacacttcacttttggaacaaaagatatatcctgctgctatgcgatttgttcatgaacctaagggaagtactatgcatgcttgaggattatataatccag |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
16473864 |
cacacttcacttttggaacaaaagatatatcctgc---tatgcgatttgtttatgaacctatgggaagtactatgcatgctggaggattatataatccag |
16473960 |
T |
|
| Q |
202 |
aagaataattatttatatataagtttaaagatacgtattaagtttagagatatatacaaagaatttcccatttttaccattaaacaatagaatttcccat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16473961 |
aagaataattatttatatataagtttaaagatacgtattaagtttagagatatatacaaagaatttcccatttttaccattaaacaatagaatttcccat |
16474060 |
T |
|
| Q |
302 |
ttcagaatctcaacaataataatgtggagtggcttaaactttctattttttggtcattgctactatctttcttccattgaaaatcatgctatgagtatcc |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
16474061 |
ttcagaatctcaacaataataatgtggagtggcttaaactttctattttttggtcattgctactatctttcttccattgagaatcatgctatgagtatcc |
16474160 |
T |
|
| Q |
402 |
tatttcttttctctttctaaaatgctacaatatgaatctgtcaatgtgnnnnnnntaaattaataccagtaaaagagaaacaactttaacttataagaaa |
501 |
Q |
| |
|
|| | |||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
16474161 |
ta--taaattctctttctgaaatgctacaatatgaatctgtcaatgtgaaaaaaataaattaataccggtaaaagagaaacagctttaacttataagaaa |
16474258 |
T |
|
| Q |
502 |
caacaatacaatgat |
516 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
16474259 |
caataatacaatgat |
16474273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 16469107 - 16469174
Alignment:
| Q |
18 |
gactaaaccaattgttagagattccacattgaggcttaaaggaagttattcaattaatagcttagaac |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16469107 |
gactaaaccaattgttagagattccacattgaggcttaaaggaagttattcaattaatagcttagaac |
16469174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 16473685 - 16473748
Alignment:
| Q |
22 |
aaaccaattgttagagattccacattgaggcttaaaggaagttattcaattaatagcttagaac |
85 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16473685 |
aaaccacttgttagagattccacattgaggcttaaaggaagtaattcaattaatagcttagaac |
16473748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 102 - 516
Target Start/End: Complemental strand, 45236913 - 45236525
Alignment:
| Q |
102 |
cacacttcacttttggaacaaaagatatatcctgctgctatgcgatttgttcatgaacctaagggaagtactatgcatgcttgaggattatataatccag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45236913 |
cacacttcacttttggaacaaaagatatatcctgct---atgcgatttgttcacgaacttaagggaagtactatgcatgctggaggattatataatccag |
45236817 |
T |
|
| Q |
202 |
aagaataattatttatatataagtttaaagatacgtattaagtttagagatatatacaaagaatttcccatttttaccattaaacaatagaatttcccat |
301 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
45236816 |
aagaataattatttatatgtaagttt-------------------agagatatatacaaagaattttccatttttagcatcaaaaaatagaatttcccat |
45236736 |
T |
|
| Q |
302 |
ttcagaatctcaacaataataatgtggagtggcttaaactttctattttttggtcattgct---actatctttcttccattgaaaatcatgctatgagta |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45236735 |
ttcagaatctcaacaataataatgtggagtggcttaaactttctattttttggtcattgctactactatctttcttccattgagaatcatgctatgagta |
45236636 |
T |
|
| Q |
399 |
tcctatttcttttctctttctaaaatgctacaatatgaatctgtcaatgtgnnnnnnntaaattaataccagtaaaagagaaacaactttaacttataag |
498 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
45236635 |
tcctatttc--ttctctttatgaaatgctacaatatgaatctgtcaatgtgaaaaaa--aaattaataccagtaaaaaagaaacagctttaacttat--- |
45236543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 45237096 - 45237029
Alignment:
| Q |
18 |
gactaaaccaattgttagagattccacattgaggcttaaaggaagttattcaattaatagcttagaac |
85 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45237096 |
gactaaatcaattgttagagattccacattgaggcttaaaggaagttatttaattaatagcttagaac |
45237029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 15597983 - 15598036
Alignment:
| Q |
241 |
aagtttagagatatatacaaagaatttcccatttttaccattaaacaatagaat |
294 |
Q |
| |
|
||||||| |||||||| ||||| |||| |||||||||| ||||||||||||||| |
|
|
| T |
15597983 |
aagtttaaagatatatgcaaagcatttaccatttttacaattaaacaatagaat |
15598036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 493
Target Start/End: Original strand, 15598117 - 15598152
Alignment:
| Q |
458 |
aaattaataccagtaaaagagaaacaactttaactt |
493 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15598117 |
aaattaataccagtaaaaaagaaacaactttaactt |
15598152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 378
Target Start/End: Original strand, 15598034 - 15598096
Alignment:
| Q |
319 |
aataatgtggagtggcttaaact---ttctattttttggtcattgctactatctttcttccat |
378 |
Q |
| |
|
||||||||||||||||||||||| || | |||| | ||||||||||||||||| ||||||| |
|
|
| T |
15598034 |
aataatgtggagtggcttaaactaacttattttttattgtcattgctactatcttccttccat |
15598096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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