View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14655_high_5 (Length: 299)
Name: NF14655_high_5
Description: NF14655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14655_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 19270599 - 19270328
Alignment:
| Q |
12 |
agagaagaagagtctgcaaagggacagtagaacttttctgaaacatcgaacatagcctcacacaacccttgaccccagcgatcaaaaacctcagccggta |
111 |
Q |
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| T |
19270599 |
agagcagaacagtctgcaaagggacagtagaacttttctgaaacatcgaacatagcctcacacaacccttgaccccagcgatcaaaaacctcggcaggca |
19270500 |
T |
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| Q |
112 |
gaataaaacggcaaaactccgcttccaacgaacctttgcactttggaaaaggacaccgaatattaacgatgttatcttcaagtttggaacctatgtatga |
211 |
Q |
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| T |
19270499 |
gaataaaacggcaaaactccgcttccaacgaacctttacactttggaaaaggacaccgaatattaacgatgttatcttcaagtttggaacctatgtatga |
19270400 |
T |
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| Q |
212 |
tgccacacaatccgagcaataagcatgagaacaaccgctgatgtaaatagcgtccttcaatgttttagtgtc |
283 |
Q |
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| T |
19270399 |
tgccacacaatccgagcaataagcatgagagcaaccgctgatgtaaatagcgtccttcattgttttagtgtc |
19270328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 283
Target Start/End: Complemental strand, 19314877 - 19314616
Alignment:
| Q |
22 |
agtctgcaaagggacagtagaacttttctgaaacatcgaacatagcctcacacaacccttgaccccagcgatcaaaaacctcagccggtagaataaaacg |
121 |
Q |
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| T |
19314877 |
agtctggaaatggacaatagaatttattcgaaacatcgaacaaagcctcacaaagcgccttaccccaccgttcaaaaaccttggccggaagaatagaacg |
19314778 |
T |
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| Q |
122 |
gcaaaactccgcttccaacgaacctttgcactttggaaaaggacaccgaatattaacgatgttatcttcaagtttggaacctatgtatgatgccacacaa |
221 |
Q |
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| T |
19314777 |
gcaaaaatccgcctccaaggaacctttgcaccctggaaaaggacactgaattttgacgatgttttcttcaagcttggaaccaatgtacatggccacgcaa |
19314678 |
T |
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| Q |
222 |
tccgagcaataagcatgagaacaaccgctgatgtaaatagcgtccttcaatgttttagtgtc |
283 |
Q |
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| T |
19314677 |
tcagagcaatatacgtgagaacaaccgctgatgtagaaagcatccttcattgttttagtgtc |
19314616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 19260409 - 19260138
Alignment:
| Q |
12 |
agagaagaagagtctgcaaagggacagtagaacttttctgaaacatcgaacatagcctcacacaacccttgaccccagcgatcaaaaacctcagccggta |
111 |
Q |
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|||| |||| ||||||| ||||| ||||||||||||| ||||| | ||||| ||||||||| ||| ||||||| |||||| ||||||| | | | |
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| T |
19260409 |
agagcagaacagtctgcgaaggggcagtagaactttttcgaaactttgaacaaagcctcacagaacagcagaccccaccgatcataaacctcgtctgaaa |
19260310 |
T |
|
| Q |
112 |
gaataaaacggcaaaactccgcttccaacgaacctttgcactttggaaaaggacaccgaatattaacgatgttatcttcaagtttggaacctatgtatga |
211 |
Q |
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|||| ||||||||||| | |||||| |||||| ||| | | | | ||||||| ||||||| || ||||||||||||||||||||| |||||| |
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| T |
19260309 |
gaatgggacggcaaaactgtggatccaacaaaccttcgcaatctagtacaggacactgaatattgacaatgttatcttcaagtttggaattgatgtattt |
19260210 |
T |
|
| Q |
212 |
tgccacacaatccgagcaataagcatgagaacaaccgctgatgtaaatagcgtccttcaatgttttagtgtc |
283 |
Q |
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| T |
19260209 |
taccacacaatcggagcaataagcgtgggagcaaccgctgatgtagaaagcatccttcattgttttcgtgtc |
19260138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 19291804 - 19291733
Alignment:
| Q |
138 |
aacgaacctttgcactttggaaaaggacaccgaatattaacgatgttatcttcaagtttggaacctatgtat |
209 |
Q |
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||||| ||| ||||||| | || ||||||||||||||| || |||||||||||||| |||||||| |||||| |
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| T |
19291804 |
aacgagcctctgcacttggaaataggacaccgaatattgaccatgttatcttcaagcttggaaccgatgtat |
19291733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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