View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14655_high_6 (Length: 283)
Name: NF14655_high_6
Description: NF14655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14655_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 7e-92; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 92 - 266
Target Start/End: Original strand, 4724582 - 4724756
Alignment:
| Q |
92 |
ttctttttagtatatttagtatcattctagaattaagactaaaaatcttataaaaaagagtgaatgttgaaatatttgttgtttaccttgttaatgacaa |
191 |
Q |
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| T |
4724582 |
ttctttttagtatatttagtatcattctagaattaagactaaaaatcttataaaaaagagtgaatgttgaaatatttgttgtttaccttgttaatgacaa |
4724681 |
T |
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| Q |
192 |
ttggaggaagcagagctgataaaggcttggagggtgtgacaggttgagtactttaatattaagcaaagtctttat |
266 |
Q |
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| T |
4724682 |
ttggaggaagcagagctgataaaggcttggagggtgtgacaggttgagtactttaatatcaagcaaagtctttat |
4724756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 256
Target Start/End: Original strand, 4744268 - 4744421
Alignment:
| Q |
103 |
atatttagtatcattctagaattaagactaaaaatcttataaaaaagagtgaatg----ttgaaatatttgttgtttaccttgttaatgacaattggagg |
198 |
Q |
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| T |
4744268 |
atatatagcatcattatagaattatgattgaaaatcttattaaaaagagtaaatgattgttgaaatacttgtt---tacattgttaatgacaattggagg |
4744364 |
T |
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| Q |
199 |
aagcagagctgataaaggcttggagggtgtgacaggttgagtactttaatattaagca |
256 |
Q |
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| T |
4744365 |
aagcagagctgatcaagggtt-gagggtgtgacaagttgagtattttaatattaagca |
4744421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 4712726 - 4712818
Alignment:
| Q |
133 |
aaaatcttataaaaaagagtgaatgttgaaatatttgttgtttaccttgttaatgacaattggaggaagcagagctgataaaggcttggaggg |
225 |
Q |
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| T |
4712726 |
aaaatcttataaaatagaattaaggttgaaatagttgttgtttatctcgttaatgacaattggagggagcagacctggttaaggcttggaggg |
4712818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 4735179 - 4735277
Alignment:
| Q |
102 |
tatatttagtatcattctagaattaagactaaaaatcttataaaaaagagtgaatgttgaaatatttgttgtttaccttgttaatgacaattggaggaag |
201 |
Q |
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| T |
4735179 |
tatatatagcatcattctagaattatgattgaaaatcttttaaaaaaga---aaggttgaaat---tcttgtttacctagttagtgacaattggaggaag |
4735272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 4724493 - 4724525
Alignment:
| Q |
15 |
aatatggctcttttagctagtacatgaatattg |
47 |
Q |
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| T |
4724493 |
aatatgactcttttagctagtacatgaatattg |
4724525 |
T |
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