View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14655_high_9 (Length: 252)
Name: NF14655_high_9
Description: NF14655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14655_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 16318587 - 16318361
Alignment:
| Q |
12 |
atgagggtggatgagtttagagacaaacctacgaggttttgaagttgaaggagctagtgagttacctgaaaatgtgctagttttatcagtggtgctaatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16318587 |
atgagggtggatgagtttagagacaaacctacgaggttttgaagttgaaggagctagtgagttacctgaaaatgtgctagttttatcagtggtgctaatt |
16318488 |
T |
|
| Q |
112 |
gctgacaaaaaacatgttgtgaaggatagcaataacaatggaagaagatgcaaatattcatgaacatatgccattgaactttgtgttacctaatgaattt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16318487 |
gctgacaaaaaacatgttgtgaaggatagcaataacaatggaagaagatgcaaatattcatgtacatatgccattgaactttgtgttacctaatgaattt |
16318388 |
T |
|
| Q |
212 |
cctaagtgattttatgttgtaatatat |
238 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
16318387 |
cctaagtgatcttatgttgtaatatat |
16318361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University