View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14655_low_1 (Length: 758)

Name: NF14655_low_1
Description: NF14655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14655_low_1
NF14655_low_1
[»] chr2 (20 HSPs)
chr2 (17-591)||(4975110-4975683)
chr2 (17-591)||(4993018-4993591)
chr2 (591-758)||(4974920-4975087)
chr2 (591-758)||(4992828-4992995)
chr2 (608-691)||(12343060-12343143)
chr2 (495-580)||(37559832-37559917)
chr2 (609-691)||(7696204-7696286)
chr2 (495-584)||(33533364-33533453)
chr2 (495-582)||(1269826-1269912)
chr2 (495-591)||(29997310-29997406)
chr2 (641-695)||(10173368-10173422)
chr2 (636-695)||(41086573-41086632)
chr2 (495-591)||(33788246-33788341)
chr2 (620-692)||(34230444-34230515)
chr2 (640-688)||(41113525-41113573)
chr2 (495-578)||(10173199-10173282)
chr2 (629-691)||(1269721-1269783)
chr2 (489-591)||(22884728-22884830)
chr2 (619-673)||(37770415-37770469)
chr2 (636-689)||(27879936-27879988)
[»] chr3 (19 HSPs)
chr3 (599-695)||(37123620-37123716)
chr3 (501-582)||(33143578-33143659)
chr3 (619-693)||(12086482-12086556)
chr3 (608-690)||(25594304-25594385)
chr3 (638-695)||(28937498-28937555)
chr3 (495-591)||(14280169-14280265)
chr3 (534-586)||(14754942-14754994)
chr3 (623-683)||(32010012-32010072)
chr3 (636-696)||(33143734-33143794)
chr3 (536-583)||(25648056-25648103)
chr3 (495-558)||(32010185-32010248)
chr3 (638-696)||(14755047-14755105)
chr3 (597-687)||(50518833-50518922)
chr3 (495-547)||(46358002-46358054)
chr3 (636-695)||(7105080-7105139)
chr3 (608-691)||(14194175-14194256)
chr3 (636-686)||(4463881-4463931)
chr3 (597-690)||(48893097-48893190)
chr3 (495-580)||(50518709-50518794)
[»] chr8 (9 HSPs)
chr8 (597-688)||(10248311-10248402)
chr8 (597-694)||(17656480-17656578)
chr8 (495-697)||(43312275-43312483)
chr8 (495-591)||(10248185-10248281)
chr8 (495-591)||(12197695-12197791)
chr8 (495-591)||(12442123-12442219)
chr8 (645-694)||(2273838-2273887)
chr8 (495-552)||(2613167-2613224)
chr8 (643-688)||(22325886-22325931)
[»] chr1 (19 HSPs)
chr1 (495-582)||(11439640-11439727)
chr1 (609-695)||(32882605-32882691)
chr1 (608-693)||(34775112-34775197)
chr1 (501-591)||(34775237-34775326)
chr1 (495-586)||(4431045-4431136)
chr1 (495-580)||(12636079-12636164)
chr1 (591-672)||(46768437-46768518)
chr1 (495-591)||(9312960-9313056)
chr1 (597-691)||(10785206-10785300)
chr1 (629-691)||(31290796-31290858)
chr1 (495-591)||(376427-376522)
chr1 (495-591)||(27102547-27102643)
chr1 (495-574)||(7451881-7451960)
chr1 (620-695)||(11439786-11439861)
chr1 (614-689)||(16577504-16577579)
chr1 (596-687)||(32863290-32863381)
chr1 (495-578)||(10785081-10785164)
chr1 (600-679)||(42374401-42374479)
chr1 (533-584)||(46768549-46768600)
[»] chr5 (24 HSPs)
chr5 (597-695)||(14302188-14302286)
chr5 (591-694)||(26045702-26045805)
chr5 (495-585)||(21391898-21391988)
chr5 (612-695)||(33109957-33110040)
chr5 (495-591)||(26405168-26405264)
chr5 (507-591)||(13953878-13953964)
chr5 (591-666)||(30097600-30097675)
chr5 (495-573)||(7391617-7391695)
chr5 (597-691)||(8297714-8297808)
chr5 (609-691)||(10174923-10175005)
chr5 (638-696)||(33258665-33258723)
chr5 (495-573)||(8297853-8297931)
chr5 (608-681)||(7682806-7682879)
chr5 (638-695)||(25992249-25992306)
chr5 (597-690)||(26405292-26405384)
chr5 (529-585)||(5187313-5187369)
chr5 (507-591)||(25992366-25992450)
chr5 (605-688)||(13954001-13954084)
chr5 (495-579)||(33109822-33109906)
chr5 (611-666)||(7195059-7195114)
chr5 (597-688)||(21398064-21398155)
chr5 (495-569)||(7194921-7194995)
chr5 (630-695)||(7161793-7161858)
chr5 (600-689)||(39183951-39184038)
[»] chr4 (17 HSPs)
chr4 (495-690)||(52009083-52009286)
chr4 (619-688)||(22810927-22810996)
chr4 (608-694)||(49747768-49747853)
chr4 (619-692)||(19311132-19311205)
chr4 (495-591)||(42719521-42719617)
chr4 (608-691)||(41117723-41117806)
chr4 (497-572)||(53823048-53823123)
chr4 (609-691)||(38636990-38637072)
chr4 (640-696)||(19673336-19673392)
chr4 (608-692)||(25753415-25753499)
chr4 (495-574)||(41117588-41117667)
chr4 (495-591)||(9262808-9262904)
chr4 (608-695)||(16832775-16832862)
chr4 (640-696)||(19815009-19815065)
chr4 (532-591)||(22810830-22810888)
chr4 (620-695)||(39420803-39420878)
chr4 (619-689)||(48098580-48098647)
[»] chr7 (14 HSPs)
chr7 (597-691)||(24324542-24324637)
chr7 (501-591)||(6726045-6726135)
chr7 (608-686)||(23983453-23983530)
chr7 (620-687)||(1321041-1321109)
chr7 (608-679)||(28534284-28534354)
chr7 (508-583)||(33719338-33719413)
chr7 (608-693)||(33719206-33719292)
chr7 (501-582)||(44755941-44756022)
chr7 (495-591)||(6716356-6716452)
chr7 (636-687)||(6716522-6716571)
chr7 (491-574)||(1321174-1321257)
chr7 (611-689)||(22567888-22567964)
chr7 (638-695)||(36674730-36674786)
chr7 (529-582)||(48058326-48058379)
[»] scaffold0119 (2 HSPs)
scaffold0119 (495-582)||(41790-41876)
scaffold0119 (625-691)||(41915-41981)
[»] scaffold0063 (1 HSPs)
scaffold0063 (623-693)||(58369-58439)
[»] scaffold0050 (1 HSPs)
scaffold0050 (597-691)||(36950-37043)
[»] chr6 (9 HSPs)
chr6 (495-580)||(3880232-3880317)
chr6 (495-591)||(13423727-13423823)
chr6 (591-653)||(15120341-15120403)
chr6 (532-591)||(6860398-6860457)
chr6 (609-667)||(32935099-32935157)
chr6 (636-696)||(3880378-3880439)
chr6 (495-560)||(16180477-16180541)
chr6 (535-583)||(20701457-20701505)
chr6 (636-690)||(20701584-20701638)
[»] scaffold1384 (1 HSPs)
scaffold1384 (619-695)||(1422-1498)
[»] scaffold0200 (1 HSPs)
scaffold0200 (629-691)||(19621-19683)


Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 17 - 591
Target Start/End: Complemental strand, 4975683 - 4975110
Alignment:
Q  17 acaaacactatttaaaaacttgcgcacataaaagggagattttgagtttgaactcggttaactaaaatgttcagttaacaatttcggtattatcaattca 116  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |    
T  4975683 acaaacactacttaaaaacttgcacacataaaagggagattttgagtttgaactcgattaactaaaatgttcagtttacaatttcggtattatcaattga 4975584  T
Q  117 gtcggactttatggacaattgtcgagnnnnnnnngaatattgcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttagttatttattcat 216  Q
    |||||| |||||||||||||||||||        |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4975583 gtcggattttatggacaattgtcgagaaaaaaaagaatatagcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttagttatttattcat 4975484  T
Q  217 cctgctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaatagatgtcttctaacttatgaataaatgtttgatataacttcct 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4975483 cctgctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaatagatgtcttctaacttatgaataaatgtttgatataacttcct 4975384  T
Q  317 taaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttcaacccttcggttattctctcttccttttagcattttcttcaat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4975383 taaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttcaacccttcggttattctctcttccttttagtattttcttcaat 4975284  T
Q  417 aatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaagaaatattactatattgatttcttttttaaacaacaaattttat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4975283 aatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaagaaatattactatattgattt-ttttttaaacaacaaattttat 4975185  T
Q  517 ttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    ||||||||||||||||||||||||||||||| |||   |||||| ||||||||||||||||||||| ||| ||||    
T  4975184 ttaaccatcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatata 4975110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 17 - 591
Target Start/End: Complemental strand, 4993591 - 4993018
Alignment:
Q  17 acaaacactatttaaaaacttgcgcacataaaagggagattttgagtttgaactcggttaactaaaatgttcagttaacaatttcggtattatcaattca 116  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |    
T  4993591 acaaacactacttaaaaacttgcacacataaaagggagattttgagtttgaactcgattaactaaaatgttcagtttacaatttcggtattatcaattga 4993492  T
Q  117 gtcggactttatggacaattgtcgagnnnnnnnngaatattgcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttagttatttattcat 216  Q
    |||||| |||||||||||||||||||        |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4993491 gtcggattttatggacaattgtcgagaaaaaaaagaatatagcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttagttatttattcat 4993392  T
Q  217 cctgctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaatagatgtcttctaacttatgaataaatgtttgatataacttcct 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4993391 cctgctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaatagatgtcttctaacttatgaataaatgtttgatataacttcct 4993292  T
Q  317 taaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttcaacccttcggttattctctcttccttttagcattttcttcaat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4993291 taaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttcaacccttcggttattctctcttccttttagtattttcttcaat 4993192  T
Q  417 aatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaagaaatattactatattgatttcttttttaaacaacaaattttat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4993191 aatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaagaaatattactatattgattt-ttttttaaacaacaaattttat 4993093  T
Q  517 ttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    ||||||||||||||||||||||||||||||| |||   |||||| ||||||||||||||||||||| ||| ||||    
T  4993092 ttaaccatcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatata 4993018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 591 - 758
Target Start/End: Complemental strand, 4975087 - 4974920
Alignment:
Q  591 accctgaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaa 690  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4975087 accctgaaaaacatccttgaggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccca 4974988  T
Q  691 caccatatattgattggatgtgtcacaccatgtcataatttttacatcccaaacttcatcaactaaaa 758  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4974987 cacgatatattgattggatgtgtcacaccatgtcataatttttacatcccaaacttcatcaactaaaa 4974920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 591 - 758
Target Start/End: Complemental strand, 4992995 - 4992828
Alignment:
Q  591 accctgaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaa 690  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4992995 accctgaaaaacatccttgaggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccca 4992896  T
Q  691 caccatatattgattggatgtgtcacaccatgtcataatttttacatcccaaacttcatcaactaaaa 758  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4992895 cacgatatattgattggatgtgtcacaccatgtcataatttttacatcccaaacttcatcaactaaaa 4992828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 608 - 691
Target Start/End: Complemental strand, 12343143 - 12343060
Alignment:
Q  608 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 691  Q
    ||||||||||  ||| |||| |||||  |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  12343143 tgaggacaacatccatcaaaatacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatccaac 12343060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 495 - 580
Target Start/End: Complemental strand, 37559917 - 37559832
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaagg 580  Q
    ||||||||||||||||||||||||||  || || || ||| | |||||||||| |||||||||||||| |||||||||||||||||    
T  37559917 ttttttaaacaacaaattttatttaaaaatgagatccctgtttaagacgaacagagatcggtgaaattgagaatacaaactaaagg 37559832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 609 - 691
Target Start/End: Complemental strand, 7696286 - 7696204
Alignment:
Q  609 gaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 691  Q
    ||||||||| ||||||||| |||||| |||||||||||| | ||| ||||||||||||||||| |||||||| ||||| ||||    
T  7696286 gaggacaacacccaccaaaatacacatcaccacctaaaataaactccttcacgaaaacgaccaatgtaaaaatgatattcaac 7696204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 495 - 584
Target Start/End: Original strand, 33533364 - 33533453
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgcc 584  Q
    ||||| |||||||||||||||||||||   ||| ||||||||||||||||||| |||  ||||||| |||| |||||||| |||||||||    
T  33533364 tttttgaaacaacaaattttatttaacagccagatctctgctcaagacgaacagagactggtgaaactaaggatacaaacaaaaggcgcc 33533453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 495 - 582
Target Start/End: Complemental strand, 1269912 - 1269826
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 582  Q
    ||||||||||||||||||||||||||| ||||  |||||| |||||||||| | ||  |||||||||| |||||||||| ||||||||    
T  1269912 ttttttaaacaacaaattttatttaacaatcaaatctctgttcaagacgaa-agaggccggtgaaattgagaatacaaattaaaggcg 1269826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 495 - 591
Target Start/End: Complemental strand, 29997406 - 29997310
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    ||||||||||||||||||||||| ||| ||| |||||||| | |||||||||| ||| || ||||||| | |||| |||| |||||| |||| ||||    
T  29997406 ttttttaaacaacaaattttattaaacaatctggtctctggtaaagacgaacagagaccgatgaaattgaaaataaaaacaaaaggcaccgtatata 29997310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 641 - 695
Target Start/End: Original strand, 10173368 - 10173422
Alignment:
Q  641 cctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 695  Q
    |||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||    
T  10173368 cctaaaacagacgtcttcatgaaaacgactactgtaaaaacgatatacaacacca 10173422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 636 - 695
Target Start/End: Original strand, 41086573 - 41086632
Alignment:
Q  636 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 695  Q
    |||||||||||||||||  ||| |||||| |||||||| |||||||||||||||| ||||    
T  41086573 caccacctaaaacagaccccttaacgaaagcgaccactctaaaaacgatatccaatacca 41086632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 591
Target Start/End: Original strand, 33788246 - 33788341
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    |||||| |||| ||||||||||||||  | ||  |||||||| |||||||||| ||| |||||| |   ||||||||||||||||||||||| ||||    
T  33788246 ttttttgaacagcaaattttatttaaa-accaaatctctgctaaagacgaacagagaccggtgataccgagaatacaaactaaaggcgccgtatata 33788341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 620 - 692
Target Start/End: Complemental strand, 34230515 - 34230444
Alignment:
Q  620 ccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaaca 692  Q
    |||||||| |||||  ||||| ||||| ||||||  | |||||||||||||||| ||||||||||||||||||    
T  34230515 ccaccaaaatacacgtcaccatctaaa-cagactcttccacgaaaacgaccactataaaaacgatatccaaca 34230444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 640 - 688
Target Start/End: Original strand, 41113525 - 41113573
Alignment:
Q  640 acctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 688  Q
    |||||||||||||| ||||||||||||||| | |||| |||||||||||    
T  41113525 acctaaaacagactccttcacgaaaacgactattgtacaaacgatatcc 41113573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 578
Target Start/End: Original strand, 10173199 - 10173282
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaa 578  Q
    ||||| ||||| ||||||||| ||||| | ||| |  |||||||||||||||| ||||||||||||   | |||||||||||||    
T  10173199 tttttgaaacatcaaattttacttaacaaccagattcctgctcaagacgaacagagatcggtgaaacatataatacaaactaaa 10173282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 691
Target Start/End: Complemental strand, 1269783 - 1269721
Alignment:
Q  629 tacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 691  Q
    |||||| |||||||||||||| | | |||| || |||||||| || |||||||||||||||||    
T  1269783 tacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatccaac 1269721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 489 - 591
Target Start/End: Original strand, 22884728 - 22884830
Alignment:
Q  489 gatttcttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgt 588  Q
    ||||| |||||| | || ||||||||||||||  | ||  ||||||||||||||||||| ||| ||  || ||  ||||||||||||||||||| ||| |    
T  22884728 gatttattttttgagcatcaaattttatttaaaaaccaaatctctgctcaagacgaacaaagaccgacgatatagagaatacaaactaaaggcgtcgtat 22884827  T
Q  589 ata 591  Q
    |||    
T  22884828 ata 22884830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 619 - 673
Target Start/End: Original strand, 37770415 - 37770469
Alignment:
Q  619 cccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccact 673  Q
    ||||||||| | |||  |||||||||||||||||| |||||||||||| ||||||    
T  37770415 cccaccaaaatccacgtcaccacctaaaacagactccttcacgaaaaccaccact 37770469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 689
Target Start/End: Original strand, 27879936 - 27879988
Alignment:
Q  636 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcca 689  Q
    |||||||||||||||||| ||||| |||||||||| ||| |||||||| |||||    
T  27879936 caccacctaaaacagactccttcaggaaaacgacctctg-aaaaacgaaatcca 27879988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 4e-28; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 599 - 695
Target Start/End: Complemental strand, 37123716 - 37123620
Alignment:
Q  599 aaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 695  Q
    ||||| |||||| |||||| ||||||||| |||||| |||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37123716 aaacacccttgaagacaacacccaccaaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 37123620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 501 - 582
Target Start/End: Original strand, 33143578 - 33143659
Alignment:
Q  501 aaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 582  Q
    ||||||||||||||||| ||| | ||| |||||||||||| |||||||| |||||||||| | ||||||||| | |||||||    
T  33143578 aaacaacaaattttattaaacaaccagatctctgctcaaggcgaacataaatcggtgaaactgagaatacaaccaaaaggcg 33143659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 619 - 693
Target Start/End: Complemental strand, 12086556 - 12086482
Alignment:
Q  619 cccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacac 693  Q
    ||||||||| || ||| ||||||||||||||||  | |||| |||||||| ||||||||||||||||| ||||||    
T  12086556 cccaccaaaataaacatcaccacctaaaacagatgtattcaagaaaacgatcactgtaaaaacgatattcaacac 12086482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 608 - 690
Target Start/End: Original strand, 25594304 - 25594385
Alignment:
Q  608 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaa 690  Q
    |||||||||| ||||||| | || ||| ||| |||||||||| ||| |||||| ||||||||||||| |||||||||||||||    
T  25594304 tgaggacaacacccaccacaataaacatcactacctaaaacatactccttcac-aaaacgaccactgaaaaaacgatatccaa 25594385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 638 - 695
Target Start/End: Original strand, 28937498 - 28937555
Alignment:
Q  638 ccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 695  Q
    |||||||||||||||  ||||||||||  |||||||||||||||||||||||| ||||    
T  28937498 ccacctaaaacagaccccttcacgaaagtgaccactgtaaaaacgatatccaatacca 28937555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 495 - 591
Target Start/End: Original strand, 14280169 - 14280265
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    ||||| |||||  |||| ||||| ||| ||||| ||| ||||||||||||||| |||||| ||||| | | |||||||| |||||||||||| ||||    
T  14280169 tttttgaaacagtaaatattattaaacaatcagatctttgctcaagacgaacaaagatcgatgaaactgataatacaaattaaaggcgccgtatata 14280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 534 - 586
Target Start/End: Original strand, 14754942 - 14754994
Alignment:
Q  534 gctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgt 586  Q
    |||||||||||||| | ||| |||||||| |||||||||||||||||||||||    
T  14754942 gctcaagacgaacaaatatcagtgaaattgagaatacaaactaaaggcgccgt 14754994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 683
Target Start/End: Complemental strand, 32010072 - 32010012
Alignment:
Q  623 ccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacga 683  Q
    ||||| || ||| |||||||||||||||||| |||||||||||||||| ||| ||||||||    
T  32010072 ccaaaataaacatcaccacctaaaacagactccttcacgaaaacgacctctgaaaaaacga 32010012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 636 - 696
Target Start/End: Original strand, 33143734 - 33143794
Alignment:
Q  636 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccat 696  Q
    |||||||||||||| ||| |||||||||||| ||||||| | |||||||||||||| ||||    
T  33143734 caccacctaaaacaaactccttcacgaaaaccaccactgaacaaacgatatccaaccccat 33143794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 536 - 583
Target Start/End: Complemental strand, 25648103 - 25648056
Alignment:
Q  536 tcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgc 583  Q
    |||||||||||| |||||||||||| ||||||||||||| ||||||||    
T  25648103 tcaagacgaacagagatcggtgaaactaagaatacaaacaaaaggcgc 25648056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 495 - 558
Target Start/End: Complemental strand, 32010248 - 32010185
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtga 558  Q
    ||||| ||||||||||||||||||||| | ||| || || ||||||||||||| ||||||||||    
T  32010248 tttttgaaacaacaaattttatttaacaaccagatccctactcaagacgaacagagatcggtga 32010185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 638 - 696
Target Start/End: Original strand, 14755047 - 14755105
Alignment:
Q  638 ccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccat 696  Q
    |||||||||||||||  |||||||||| |||||| ||||||||||||||| || |||||    
T  14755047 ccacctaaaacagaccccttcacgaaagcgaccattgtaaaaacgatatctaataccat 14755105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 597 - 687
Target Start/End: Original strand, 50518833 - 50518922
Alignment:
Q  597 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatc 687  Q
    ||||||| || ||||||| || |||| |||| |||||  ||||| |||||||||||| ||||||| | || ||||||||||||||||||||    
T  50518833 aaaaacacccatgaggaccacacccaacaaaatacacctcaccatctaaaacagactccttcacg-ataccaccactgtaaaaacgatatc 50518922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 547
Target Start/End: Original strand, 46358002 - 46358054
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaaca 547  Q
    ||||| ||||||||||||||||||||| | ||| || ||||||||||||||||    
T  46358002 tttttgaaacaacaaattttatttaacaaccagatccctgctcaagacgaaca 46358054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 695
Target Start/End: Complemental strand, 7105139 - 7105080
Alignment:
Q  636 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 695  Q
    |||||||||||||||||||||||| |||||| | |||| |||||||  |||||| |||||    
T  7105139 caccacctaaaacagacttcttcaagaaaacaagcactataaaaacagtatccaccacca 7105080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 608 - 691
Target Start/End: Complemental strand, 14194256 - 14194175
Alignment:
Q  608 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 691  Q
    ||||||| || ||||||||| |||||  |||||||||||||||||| | |||||||| || |||||| || |||||||||||||    
T  14194256 tgaggaccacacccaccaaaatacacgtcaccacctaaaacagactccatcacgaaatcg-ccactg-aataacgatatccaac 14194175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 636 - 686
Target Start/End: Original strand, 4463881 - 4463931
Alignment:
Q  636 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatat 686  Q
    |||||||||||| | ||||||||| || | |||||||||||||||||||||    
T  4463881 caccacctaaaataaacttcttcatgacaccgaccactgtaaaaacgatat 4463931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 690
Target Start/End: Original strand, 48893097 - 48893190
Alignment:
Q  597 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaa 690  Q
    ||||||| || ||| |||||| ||||||||| ||||   |||||||||||| ||||| ||| || |||||||  || |||||||| ||||||||    
T  48893097 aaaaacacccctgaagacaacacccaccaaaatacatgtcaccacctaaaagagactcctttacaaaaacgattacggtaaaaacaatatccaa 48893190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 580
Target Start/End: Original strand, 50518709 - 50518794
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaagg 580  Q
    ||||| ||||| ||||||||||| ||| ||  | || |||||||||||||||| |||  ||||||| | ||||||||||| |||||    
T  50518709 tttttgaaacatcaaattttattaaacaatttgatccctgctcaagacgaacagagactggtgaaactgagaatacaaacaaaagg 50518794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 597 - 688
Target Start/End: Original strand, 10248311 - 10248402
Alignment:
Q  597 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 688  Q
    ||||||| ||||||||||||| ||| ||||| |||||  |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||    
T  10248311 aaaaacacccttgaggacaacacccgccaaaatacacgtcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcc 10248402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 597 - 694
Target Start/End: Original strand, 17656480 - 17656578
Alignment:
Q  597 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacg-aaaacgaccactgtaaaaacgatatccaacacc 694  Q
    ||||||| ||||||||||||| ||||||||| | |||  ||||| |||||||||||| ||||| | ||||||||||||| |||||||||||||||||||    
T  17656480 aaaaacacccttgaggacaacacccaccaaaattcacgtcaccatctaaaacagactccttcaagaaaaacgaccactgcaaaaacgatatccaacacc 17656578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 495 - 697
Target Start/End: Original strand, 43312275 - 43312483
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtat---- 590  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||| | ||| || ||||| | ||||| |  |||||||||||| | |||        
T  43312275 ttttttaaacaacaaattttatttaaccacctggtctctgctcaagacgaatagagaccgatgaaactgagaatgc--actaaaggcgccatatataggc 43312372  T
Q  591 -----accctgaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgata 685  Q
         | ||| ||||||| |  |||  ||||| |||| |||| ||||   ||||||||||| |||||| || ||| ||||||||||||||||||||||||    
T  43312373 ggaacatcctaaaaaacaccgctga-aacaacacccatcaaaatacatgtcaccacctaaatcagactcctacacaaaaacgaccactgtaaaaacgata 43312471  T
Q  686 tccaacaccata 697  Q
    ||| ||||||||    
T  43312472 tcccacaccata 43312483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 495 - 591
Target Start/End: Original strand, 10248185 - 10248281
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    ||||| ||||||||||||||||||||||||||||||   |||||||||||||  | |||  ||||| | ||||||||| ||||||||| ||| ||||    
T  10248185 tttttgaaacaacaaattttatttaaccatcaggtccgggctcaagacgaactgaaatcattgaaactgagaatacaacctaaaggcgtcgtatata 10248281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 591
Target Start/End: Original strand, 12197695 - 12197791
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    |||||| ||||  |||||||||||||| |  || ||| ||||||||||||| | |||||||||||    ||||||||||||||||||| ||| ||||    
T  12197695 tttttttaacagtaaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctata 12197791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 591
Target Start/End: Original strand, 12442123 - 12442219
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    |||||| ||||  |||||||||||||| |  || ||| ||||||||||||| | |||||||||||    ||||||||||||||||||| ||| ||||    
T  12442123 tttttttaacagtaaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctata 12442219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 645 - 694
Target Start/End: Original strand, 2273838 - 2273887
Alignment:
Q  645 aaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacc 694  Q
    ||||||||| ||||||||||||| | || ||||||||||||||| |||||    
T  2273838 aaacagactccttcacgaaaacgccaaccgtaaaaacgatatcccacacc 2273887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 552
Target Start/End: Original strand, 2613167 - 2613224
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagat 552  Q
    ||||| ||||| ||||||||||||||| ||||| || || ||||||||||| ||||||    
T  2613167 tttttcaaacagcaaattttatttaacaatcagatccctactcaagacgaatatagat 2613224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 688
Target Start/End: Original strand, 22325886 - 22325931
Alignment:
Q  643 taaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 688  Q
    ||||||||||| ||| || |||||||||| ||||||||||||||||    
T  22325886 taaaacagactccttaacaaaaacgaccattgtaaaaacgatatcc 22325931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 8e-23; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 495 - 582
Target Start/End: Original strand, 11439640 - 11439727
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 582  Q
    ||||||||||||||||||||||| ||| | ||| ||||||||||||||||||| |||||||||||| | ||||||||||| |||||||    
T  11439640 ttttttaaacaacaaattttattaaacaaccagatctctgctcaagacgaacaaagatcggtgaaaatgagaatacaaacaaaaggcg 11439727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 609 - 695
Target Start/End: Complemental strand, 32882691 - 32882605
Alignment:
Q  609 gaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 695  Q
    ||||||||| ||||||||| || ||| |||| |||||||| |||| |||||||||||||| ||||||||| ||||||||||||||||    
T  32882691 gaggacaacacccaccaaaatatacatcaccgcctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacacca 32882605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 608 - 693
Target Start/End: Complemental strand, 34775197 - 34775112
Alignment:
Q  608 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacac 693  Q
    |||||||||| ||||||||| |||||  || ||||||||||||||| ||||||||||||||| ||||||||||||| |||| ||||    
T  34775197 tgaggacaacacccaccaaaatacacgtcatcacctaaaacagactccttcacgaaaacgacaactgtaaaaacgaaatcccacac 34775112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 501 - 591
Target Start/End: Complemental strand, 34775326 - 34775237
Alignment:
Q  501 aaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||| ||| || | ||  | ||||||||||||||||||||||| ||||    
T  34775326 aaacaacaaattttatttaatcatcaggtc-ctgctcaagacgaacaaagaccgataaagctgagaatacaaactaaaggcgccgtatata 34775237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 495 - 586
Target Start/End: Complemental strand, 4431136 - 4431045
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgt 586  Q
    ||||| ||||| ||||||||||| ||| | ||  ||||||||||||||||| | ||| |||||||||| ||||||||||| |||||||||||    
T  4431136 tttttgaaacagcaaattttattaaacaaacatatctctgctcaagacgaatagagaccggtgaaattgagaatacaaacaaaaggcgccgt 4431045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 495 - 580
Target Start/End: Original strand, 12636079 - 12636164
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaagg 580  Q
    ||||||||||||||||||||||||||| ||| |||| || ||||||||||||| ||| |||| ||| | | ||||||| |||||||    
T  12636079 ttttttaaacaacaaattttatttaactatcgggtccctactcaagacgaacagagaccggtaaaactgataatacaacctaaagg 12636164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 591 - 672
Target Start/End: Complemental strand, 46768518 - 46768437
Alignment:
Q  591 accctgaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccac 672  Q
    ||||| ||||||| ||  ||||||||| ||||||||| | |||  |||||||||||||||||| ||||||||||||||||||    
T  46768518 accctaaaaaacacccccgaggacaacacccaccaaaattcacgtcaccacctaaaacagactccttcacgaaaacgaccac 46768437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 495 - 591
Target Start/End: Original strand, 9312960 - 9313056
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    ||||||||||||||||||||||| ||| |  || ||||||||||||||||||| ||| |||||||| | | ||||||| | ||||||| ||| ||||    
T  9312960 ttttttaaacaacaaattttattaaacaacgagatctctgctcaagacgaacagagaccggtgaaacttataatacaatcaaaaggcgtcgtatata 9313056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 597 - 691
Target Start/End: Original strand, 10785206 - 10785300
Alignment:
Q  597 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 691  Q
    ||||||| ||||||||||||| |||| |||| ||||    | ||| ||||||||||| |||||||||||||||  ||| ||||||||||||||||    
T  10785206 aaaaacacccttgaggacaacacccatcaaaatacatgttatcacttaaaacagactccttcacgaaaacgacatctgaaaaaacgatatccaac 10785300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 691
Target Start/End: Original strand, 31290796 - 31290858
Alignment:
Q  629 tacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 691  Q
    |||||| ||||||||||| |||||| |||| ||||||||||||||||||||| |||| |||||    
T  31290796 tacacatcaccacctaaatcagactccttcgcgaaaacgaccactgtaaaaatgatagccaac 31290858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 495 - 591
Target Start/End: Original strand, 376427 - 376522
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    ||||||||||| ||||||||||| ||||| || ||| |||||||||||||||| |||  | |||||   |||||||||| |||||||||||| ||||    
T  376427 ttttttaaacagcaaattttatt-aaccaccacgtccctgctcaagacgaacagagacggatgaaacagagaatacaaagtaaaggcgccgtatata 376522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 495 - 591
Target Start/End: Complemental strand, 27102643 - 27102547
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    ||||||||||| ||||||||||| ||| | ||| |||||| |||||||||||| |||  ||||||  | ||||||||||| ||||| ||||| ||||    
T  27102643 ttttttaaacagcaaattttattaaacaaccagatctctgttcaagacgaacaaagactggtgaacctgagaatacaaacaaaaggtgccgtatata 27102547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 495 - 574
Target Start/End: Original strand, 7451881 - 7451960
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaac 574  Q
    ||||||||||| ||||| ||||| ||| |  || ||||||||||||||||||| ||| |||||||| | |||||||||||    
T  7451881 ttttttaaacagcaaatattattaaacaactagatctctgctcaagacgaacagagaccggtgaaactgagaatacaaac 7451960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 620 - 695
Target Start/End: Original strand, 11439786 - 11439861
Alignment:
Q  620 ccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 695  Q
    |||||||| |||||  ||||||||||||||||   |||||||||| | ||||| ||||||| ||||||||||||||    
T  11439786 ccaccaaaatacacgtcaccacctaaaacagatcccttcacgaaagcaaccaccgtaaaaatgatatccaacacca 11439861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 614 - 689
Target Start/End: Complemental strand, 16577579 - 16577504
Alignment:
Q  614 caacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcca 689  Q
    |||| ||||||||| || ||| || |||||||||||||||  ||||||||||||||||||  ||||| ||||||||    
T  16577579 caacacccaccaaaataaacatcatcacctaaaacagactctttcacgaaaacgaccactcaaaaaatgatatcca 16577504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 596 - 687
Target Start/End: Original strand, 32863290 - 32863381
Alignment:
Q  596 gaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatc 687  Q
    |||||||| ||  ||||||||| ||||||||  |||||  |||| ||||||||||| | || |||||||||||||| |||||| ||||||||    
T  32863290 gaaaaacacccaagaggacaacacccaccaacatacacgtcaccgcctaaaacagaatcctccacgaaaacgaccattgtaaacacgatatc 32863381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 578
Target Start/End: Original strand, 10785081 - 10785164
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaa 578  Q
    ||||||||||| ||||||| ||||||| | ||| || |||||||||||||| | |||  ||| ||| | |||||||||||||||    
T  10785081 ttttttaaacatcaaatttcatttaacaaccagatccctgctcaagacgaatagagacgggtaaaactgagaatacaaactaaa 10785164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 679
Target Start/End: Complemental strand, 42374479 - 42374401
Alignment:
Q  600 aacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaa 679  Q
    |||| ||||| ||||||||||||||||  || ||| |||||||||||||| | | ||||||| |||||||||||| ||||    
T  42374479 aacacccttggggacaacccccaccaagataaacatcaccacctaaaacaaattccttcacg-aaacgaccactgaaaaa 42374401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 584
Target Start/End: Complemental strand, 46768600 - 46768549
Alignment:
Q  533 tgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgcc 584  Q
    ||||||||||||||| |||| ||||||||| || |||||||| |||||||||    
T  46768600 tgctcaagacgaacagagattggtgaaattgagcatacaaacaaaaggcgcc 46768549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 597 - 695
Target Start/End: Original strand, 14302188 - 14302286
Alignment:
Q  597 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 695  Q
    ||||||| || ||| |||||| ||||||||| |||||  |||||||||||||||| | |||| |||||||||||| |||||||||||||||||||||||    
T  14302188 aaaaacacccctgatgacaacacccaccaaaatacacgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacacca 14302286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 591 - 694
Target Start/End: Original strand, 26045702 - 26045805
Alignment:
Q  591 accctgaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaa 690  Q
    ||||| ||||||  || |||||||||| ||||||||| | |||  |||||||||||||||||||||||| ||||| |||||| |||||||||| ||||||    
T  26045702 accctaaaaaacgcccctgaggacaacacccaccaaaattcacgtcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaa 26045801  T
Q  691 cacc 694  Q
    ||||    
T  26045802 cacc 26045805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 495 - 585
Target Start/End: Original strand, 21391898 - 21391988
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccg 585  Q
    ||||| |||||||||||||||||||  | ||||||| |||||||||||||||| ||| |||||||| | ||||||||||||||||| ||||    
T  21391898 tttttgaaacaacaaattttatttattcttcaggtccctgctcaagacgaacaaagaccggtgaaactgagaatacaaactaaaggtgccg 21391988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 612 - 695
Target Start/End: Original strand, 33109957 - 33110040
Alignment:
Q  612 gacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 695  Q
    |||||| ||||||||| |||||  || ||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||||    
T  33109957 gacaacacccaccaaaatacacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaaaacgatatccaatacca 33110040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 495 - 591
Target Start/End: Original strand, 26405168 - 26405264
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    |||||| |||||||||||||||| ||| | ||| | ||||||||||||||||| ||| |||||||| | ||||||||||| ||||||| ||| ||||    
T  26405168 tttttttaacaacaaattttattaaacaaccagatttctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaggcgtcgtatata 26405264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 507 - 591
Target Start/End: Original strand, 13953878 - 13953964
Alignment:
Q  507 caaattttatttaaccatcaggtctctgctcaagacgaacatagatcg--gtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    ||||||||||||||||  ||||||||||||||||||||||| ||| ||  |||||| | ||| ||||||||||||||||||| ||||    
T  13953878 caaattttatttaacctccaggtctctgctcaagacgaacagagaccggtgtgaaactgagagtacaaactaaaggcgccgtatata 13953964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 591 - 666
Target Start/End: Complemental strand, 30097675 - 30097600
Alignment:
Q  591 accctgaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaac 666  Q
    ||||| |||||||||| ||| |||||| ||||||||| |||||  |||||||||||||||||| ||||||||||||    
T  30097675 accctaaaaaacatccatgatgacaacacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 30097600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 495 - 573
Target Start/End: Original strand, 7391617 - 7391695
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaa 573  Q
    |||||||| |||||||||||||| || |||||| |||||| |||||||||||| ||| |||||||| | ||||||||||    
T  7391617 ttttttaatcaacaaattttattaaatcatcagatctctgttcaagacgaacagagaccggtgaaaatgagaatacaaa 7391695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 597 - 691
Target Start/End: Complemental strand, 8297808 - 8297714
Alignment:
Q  597 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 691  Q
    ||||||| || |||||| |||  |||||||| |||||| |||||||||||||| ||| ||||| ||||| ||||| |||||||||||| ||||||    
T  8297808 aaaaacacccctgaggataacatccaccaaaatacacatcaccacctaaaacacactccttcaagaaaaagaccaatgtaaaaacgatttccaac 8297714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 609 - 691
Target Start/End: Complemental strand, 10175005 - 10174923
Alignment:
Q  609 gaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 691  Q
    ||||||||| ||||||||| |||||   ||||||||||||||||| ||||   ||||||||||| ||||||||||||||||||    
T  10175005 gaggacaacacccaccaaagtacacgtaaccacctaaaacagactccttctaaaaaacgaccacggtaaaaacgatatccaac 10174923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 638 - 696
Target Start/End: Original strand, 33258665 - 33258723
Alignment:
Q  638 ccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccat 696  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||||||||||| |||||    
T  33258665 ccacctaaaacagatctcttcacgaaagcgaccactgtaaaaacgatatccaataccat 33258723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 573
Target Start/End: Complemental strand, 8297931 - 8297853
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaa 573  Q
    |||||| |||| ||||||||||| ||| ||||| ||||| ||||||||||||| ||| |||||||| | ||||||||||    
T  8297931 tttttttaacagcaaattttattgaacaatcagatctctactcaagacgaacagagaccggtgaaactgagaatacaaa 8297853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 608 - 681
Target Start/End: Complemental strand, 7682879 - 7682806
Alignment:
Q  608 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaac 681  Q
    |||| ||||| ||||||||| |||||| |||||||||||| |||||  ||||| ||||||||||| ||||||||    
T  7682879 tgagaacaacacccaccaaaatacacatcaccacctaaaatagactctttcacaaaaacgaccaccgtaaaaac 7682806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 638 - 695
Target Start/End: Complemental strand, 25992306 - 25992249
Alignment:
Q  638 ccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 695  Q
    |||||||||||||||  |||||||||| | ||||||||||||||||||||||| ||||    
T  25992306 ccacctaaaacagaccccttcacgaaagcaaccactgtaaaaacgatatccaatacca 25992249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 597 - 690
Target Start/End: Original strand, 26405292 - 26405384
Alignment:
Q  597 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaa 690  Q
    ||||||| || ||||||||||  |||||||| |||||  |||||||||||||||||||||||| | ||| || |||||| ||||| ||||||||    
T  26405292 aaaaacacccctgaggacaacaaccaccaaaatacacgtcaccacctaaaacagacttcttcatggaaatga-cactgttaaaaccatatccaa 26405384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 529 - 585
Target Start/End: Complemental strand, 5187369 - 5187313
Alignment:
Q  529 tctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccg 585  Q
    ||||||||||||| || || |||||||||||||| ||||||||||| ||||||||||    
T  5187369 tctctgctcaagaagagcagagatcggtgaaattgagaatacaaacaaaaggcgccg 5187313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 507 - 591
Target Start/End: Complemental strand, 25992450 - 25992366
Alignment:
Q  507 caaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    ||||| ||||| ||| | ||| ||||||||||||||||||| ||| |||||||| | | ||||||||| ||||||||||| ||||    
T  25992450 caaatattattaaacaaccagatctctgctcaagacgaacagagaccggtgaaaatgataatacaaacaaaaggcgccgtatata 25992366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 605 - 688
Target Start/End: Original strand, 13954001 - 13954084
Alignment:
Q  605 ccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 688  Q
    ||||||||||||| ||||||||| ||||   || | |||||||||||||| |||| ||| ||||| ||||||||||| ||||||    
T  13954001 ccttgaggacaactcccaccaaaatacatgtcatctcctaaaacagactttttcatgaagacgactactgtaaaaacaatatcc 13954084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 579
Target Start/End: Original strand, 33109822 - 33109906
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaag 579  Q
    |||||| |||| ||||| ||||| ||| ||||  |||||||| |||||||||||| || ||||||| | ||||||||||| ||||    
T  33109822 tttttttaacagcaaatattattaaacaatcaaatctctgcttaagacgaacataaattggtgaaactgagaatacaaacaaaag 33109906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 666
Target Start/End: Original strand, 7195059 - 7195114
Alignment:
Q  611 ggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaac 666  Q
    ||||||| ||||||||| |||||  |||||||||||||||||| |||||| |||||    
T  7195059 ggacaacacccaccaaaatacacgtcaccacctaaaacagactccttcacaaaaac 7195114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 688
Target Start/End: Original strand, 21398064 - 21398155
Alignment:
Q  597 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 688  Q
    ||||||| || |||||||||| |  || ||| |||||  ||||| |||||||||||  |||||||||||| |||  ||||||||||||||||    
T  21398064 aaaaacacccctgaggacaacacttacaaaaatacacgtcaccatctaaaacagacgccttcacgaaaacaacctttgtaaaaacgatatcc 21398155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 495 - 569
Target Start/End: Original strand, 7194921 - 7194995
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaata 569  Q
    ||||||||||| ||||||||||| ||| | ||| || || ||||||||||||| |||||| ||||| | ||||||    
T  7194921 ttttttaaacagcaaattttattaaacaaccagatccctactcaagacgaacaaagatcgatgaaactgagaata 7194995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 695
Target Start/End: Original strand, 7161793 - 7161858
Alignment:
Q  630 acacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 695  Q
    ||||| ||| |||||||||||||| |||||| ||||| | ||||||||| ||||| |||| |||||    
T  7161793 acacatcactacctaaaacagactccttcacaaaaacaagcactgtaaacacgatttccaccacca 7161858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 689
Target Start/End: Original strand, 39183951 - 39184038
Alignment:
Q  600 aacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcca 689  Q
    |||| ||||||||||||| ||||| ||| || | | ||||||||||||||||||   ||||| |||||||||||| ||||||| ||||||    
T  39183951 aacacccttgaggacaacacccactaaaataaagatcaccacctaaaacagactctatcacg-aaacgaccactg-aaaaacggtatcca 39184038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 495 - 690
Target Start/End: Complemental strand, 52009286 - 52009083
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata--- 591  Q
    ||||| ||||| ||||||||||| ||| | ||| || |||| ||||||||| | |||||||||||| | || || |||||  |||||||||| ||||       
T  52009286 tttttgaaacagcaaattttattaaactaccagatccctgcccaagacgaatagagatcggtgaaactgagcatgcaaacataaggcgccgtatataggc 52009187  T
Q  592 ------ccctgaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgata 685  Q
          |||| ||||||| || ||||||||||||| ||||||   ||| ||||||||||||||||||| | ||| | || ||||||||||||||||||||    
T  52009186 ggaacaccctaaaaaacacccctgaggacaacccc-accaaaaatcacgccaccacctaaaacagactccgtcatggaagcgaccactgtaaaaacgata 52009088  T
Q  686 tccaa 690  Q
    |||||    
T  52009087 tccaa 52009083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 619 - 688
Target Start/End: Original strand, 22810927 - 22810996
Alignment:
Q  619 cccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 688  Q
    ||||||||| |||||  |||| ||||||||||||| |||||||||| |||||||||||||||||||||||    
T  22810927 cccaccaaaatacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcc 22810996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 608 - 694
Target Start/End: Complemental strand, 49747853 - 49747768
Alignment:
Q  608 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacc 694  Q
    |||||||||| ||||||||| | ||   ||||||||||||||||||  |||||||||||||||| ||||||||||| ||||||||||    
T  49747853 tgaggacaacacccaccaaaattcatgtcaccacctaaaacagactctttcacgaaaacgaccattgtaaaaacga-atccaacacc 49747768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 619 - 692
Target Start/End: Original strand, 19311132 - 19311205
Alignment:
Q  619 cccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaaca 692  Q
    ||||||||| |||||  |||||||  ||||||| | |||||||||||||| |||||||||||||||||||||||    
T  19311132 cccaccaaaatacacgtcaccaccataaacagattccttcacgaaaacgagcactgtaaaaacgatatccaaca 19311205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 495 - 591
Target Start/End: Complemental strand, 42719617 - 42719521
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    |||||||| |||||||||||||| ||| ||||  || |||||||||||||| | ||| |||||||| | ||||||||||| |||| |||||| ||||    
T  42719617 ttttttaagcaacaaattttattaaacaatcaaatccctgctcaagacgaatagagaccggtgaaactgagaatacaaacaaaagacgccgtatata 42719521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 608 - 691
Target Start/End: Original strand, 41117723 - 41117806
Alignment:
Q  608 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 691  Q
    |||||||||| ||||||||| |||| | ||||||||| ||||||||  | ||||||||| |||  |||||||||||||||||||    
T  41117723 tgaggacaacacccaccaaaatacatatcaccacctagaacagactcatgcacgaaaacaaccgttgtaaaaacgatatccaac 41117806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 497 - 572
Target Start/End: Original strand, 53823048 - 53823123
Alignment:
Q  497 ttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaa 572  Q
    |||||||||||| |||||||||||||| || |||  ||||||| ||||||| |||||||| ||||| |||||||||    
T  53823048 ttttaaacaacatattttatttaaccaccatgtcaatgctcaaaacgaacagagatcggtaaaattgagaatacaa 53823123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 609 - 691
Target Start/End: Original strand, 38636990 - 38637072
Alignment:
Q  609 gaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 691  Q
    ||||||||| ||||| ||| ||||   |||||||||||||| ||| |||||||||||| ||| ||||||||| ||||||||||    
T  38636990 gaggacaacacccacgaaaatacatgtcaccacctaaaacaaactccttcacgaaaacaaccgctgtaaaaatgatatccaac 38637072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 640 - 696
Target Start/End: Complemental strand, 19673392 - 19673336
Alignment:
Q  640 acctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccat 696  Q
    |||| |||||||| |||||||||||| ||||||||||||| | ||||||||||||||    
T  19673392 acctcaaacagacgtcttcacgaaaatgaccactgtaaaagcaatatccaacaccat 19673336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 608 - 692
Target Start/End: Complemental strand, 25753499 - 25753415
Alignment:
Q  608 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaaca 692  Q
    |||||||||| ||||||||| ||||   || ||||||||||| ||| ||||||||||| | ||||||||||| || |||||||||    
T  25753499 tgaggacaacacccaccaaaatacaagtcatcacctaaaacaaactccttcacgaaaagggccactgtaaaatcggtatccaaca 25753415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 495 - 574
Target Start/End: Original strand, 41117588 - 41117667
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaac 574  Q
    ||||| ||||||||||||||||| ||| |  || ||||||||||||||||||| |||  ||||||||| ||| |||||||    
T  41117588 tttttgaaacaacaaattttattaaacaactagatctctgctcaagacgaacagagacaggtgaaattgagactacaaac 41117667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 591
Target Start/End: Complemental strand, 9262904 - 9262808
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    ||||| ||||| ||||||||||| ||| | ||  || | |||||||||||||| ||| || ||||| | ||||||||||| ||||||||||| ||||    
T  9262904 tttttaaaacagcaaattttattaaacaaccaaatccccgctcaagacgaacaaagaccgatgaaactgagaatacaaacaaaaggcgccgtatata 9262808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 608 - 695
Target Start/End: Original strand, 16832775 - 16832862
Alignment:
Q  608 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaa-cgaccactgtaaaaacgatatccaacacca 695  Q
    |||||||||| |||||||||| | ||  |||||||||||||| | | || |||||||| ||||| ||||||||| ||||||||||||||    
T  16832775 tgaggacaacacccaccaaataa-acgtcaccacctaaaacatattcctgcacgaaaaacgaccgctgtaaaaaagatatccaacacca 16832862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 640 - 696
Target Start/End: Original strand, 19815009 - 19815065
Alignment:
Q  640 acctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccat 696  Q
    |||| |||||||| |||||||||||| |||||| ||||||| ||||||||| |||||    
T  19815009 acctcaaacagacgtcttcacgaaaatgaccacggtaaaaatgatatccaataccat 19815065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 532 - 591
Target Start/End: Original strand, 22810830 - 22810888
Alignment:
Q  532 ctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    |||||||||||||||| |||  ||||||||| ||||||||||| ||||||||||| ||||    
T  22810830 ctgctcaagacgaacagagactggtgaaattgagaatacaaac-aaaggcgccgtatata 22810888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 695
Target Start/End: Original strand, 39420803 - 39420878
Alignment:
Q  620 ccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 695  Q
    |||||||| |||||  ||||| ||||||| |||| || ||||| ||| ||||| ||| ||||||||||||||||||    
T  39420803 ccaccaaaatacacgtcaccatctaaaactgactcctacacgagaacaaccaccgtataaacgatatccaacacca 39420878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 689
Target Start/End: Complemental strand, 48098647 - 48098580
Alignment:
Q  619 cccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcca 689  Q
    |||||||||| ||||  ||||||||||||||  |||  |||| ||||||||||||||||||||||||||||    
T  48098647 cccaccaaat-acacgtcaccacctaaaacactctt--tcacaaaaacgaccactgtaaaaacgatatcca 48098580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 597 - 691
Target Start/End: Original strand, 24324542 - 24324637
Alignment:
Q  597 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacg-aaaacgaccactgtaaaaacgatatccaac 691  Q
    ||||||| ||||||||||||| | ||||||| |||||  |||||| ||||||||||| ||||||| |||||||||| ||||| |||||||||||||    
T  24324542 aaaaacacccttgaggacaacactcaccaaaatacacgtcaccacttaaaacagactccttcacgaaaaacgaccattgtaagaacgatatccaac 24324637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 501 - 591
Target Start/End: Original strand, 6726045 - 6726135
Alignment:
Q  501 aaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    ||||||||||||||||| ||| | ||| ||||||||||||||||||| |||||||||||| | ||||||||||| |||  |||||| ||||    
T  6726045 aaacaacaaattttattaaacaaccagatctctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaaacgccgtatata 6726135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 608 - 686
Target Start/End: Complemental strand, 23983530 - 23983453
Alignment:
Q  608 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatat 686  Q
    |||||||||| ||||||||| || ||||||||||||||||||||||  ||||||||||| ||||||| |||||||||||    
T  23983530 tgaggacaacacccaccaaaataaacaccaccacctaaaacagactcattcacgaaaacaaccactg-aaaaacgatat 23983453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 687
Target Start/End: Complemental strand, 1321109 - 1321041
Alignment:
Q  620 ccaccaaattacacaccaccacctaaaacagacttc-ttcacgaaaacgaccactgtaaaaacgatatc 687  Q
    |||||||| |||||| |||||||||||||||||  | ||||||||| | ||||||||||||||||||||    
T  1321109 ccaccaaaatacacatcaccacctaaaacagacccctttcacgaaagcaaccactgtaaaaacgatatc 1321041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 608 - 679
Target Start/End: Original strand, 28534284 - 28534354
Alignment:
Q  608 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaa 679  Q
    |||||||||| ||||||||| || ||| ||||||||||||||||||  |||||| |||||||||||| ||||    
T  28534284 tgaggacaacacccaccaaaataaacatcaccacctaaaacagactctttcacg-aaacgaccactgaaaaa 28534354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 508 - 583
Target Start/End: Complemental strand, 33719413 - 33719338
Alignment:
Q  508 aaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgc 583  Q
    |||||||||| ||| | ||| || |||||||||||||||| |||||||||||| | ||||||||||| || |||||    
T  33719413 aaattttattaaacaaccagatccctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaacggcgc 33719338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 608 - 693
Target Start/End: Complemental strand, 33719292 - 33719206
Alignment:
Q  608 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaa-cgaccactgtaaaaacgatatccaacac 693  Q
    |||||||||| ||||||||| |||  | |||| |||||||| |||| |||||| |||| ||||| ||||||||| ||||||||||||    
T  33719292 tgaggacaacacccaccaaaatacctatcaccgcctaaaaccgactccttcacaaaaaacgacctctgtaaaaatgatatccaacac 33719206  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 501 - 582
Target Start/End: Complemental strand, 44756022 - 44755941
Alignment:
Q  501 aaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 582  Q
    ||||||||||||||||| ||| |  || || |||||||||||||||  ||||| |||||| |||| |||||||| |||||||    
T  44756022 aaacaacaaattttattaaacaactagatccctgctcaagacgaacgaagatcagtgaaactaagcatacaaacaaaaggcg 44755941  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 591
Target Start/End: Original strand, 6716356 - 6716452
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    ||||||||||| ||||||||||||||||| || ||| ||||||||||| |||  |||  | |||||   |||||||||| |||||| ||||| ||||    
T  6716356 ttttttaaacatcaaattttatttaaccaccaagtccctgctcaagacaaaccgagacagatgaaacagagaatacaaattaaaggggccgtatata 6716452  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 636 - 687
Target Start/End: Original strand, 6716522 - 6716571
Alignment:
Q  636 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatc 687  Q
    ||||||||||||||  || |||||||||||||||||||||||||||| ||||    
T  6716522 caccacctaaaaca--ctccttcacgaaaacgaccactgtaaaaacggtatc 6716571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 574
Target Start/End: Complemental strand, 1321257 - 1321174
Alignment:
Q  491 tttcttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaac 574  Q
    ||||||| | ||||||||||||||||| ||| | ||  ||||| ||||||||||||  |||||| ||||| | |||||||||||    
T  1321257 tttctttctgaaacaacaaattttattaaacaaccacatctctactcaagacgaacggagatcgatgaaactgagaatacaaac 1321174  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 611 - 689
Target Start/End: Original strand, 22567888 - 22567964
Alignment:
Q  611 ggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcca 689  Q
    |||||||  |||||||| |||||| ||||||||||||||||||  |||||| |||| ||||||| ||||||| ||||||    
T  22567888 ggacaacatccaccaaaatacacatcaccacctaaaacagactctttcacg-aaacaaccactg-aaaaacggtatcca 22567964  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 695
Target Start/End: Complemental strand, 36674786 - 36674730
Alignment:
Q  638 ccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 695  Q
    |||||||||| ||||| ||||| |||| |||||||| |||||||||||||||| ||||    
T  36674786 ccacctaaaagagactacttca-gaaagcgaccactataaaaacgatatccaatacca 36674730  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 582
Target Start/End: Original strand, 48058326 - 48058379
Alignment:
Q  529 tctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 582  Q
    |||||||||||||| |||| ||| |||||||||  ||||||||||| |||||||    
T  48058326 tctctgctcaagacaaacagagaccggtgaaatagagaatacaaacgaaaggcg 48058379  T

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Target: scaffold0119 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 495 - 582
Target Start/End: Original strand, 41790 - 41876
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 582  Q
    ||||||||||||||||||||||||||| ||||  |||||| |||||||||| | ||  |||||||||| |||||||||| ||||||||    
T  41790 ttttttaaacaacaaattttatttaacaatcaaatctctgttcaagacgaa-agaggccggtgaaattgagaatacaaattaaaggcg 41876  T

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Target: scaffold0119; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 625 - 691
Target Start/End: Original strand, 41915 - 41981
Alignment:
Q  625 aaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 691  Q
    ||| |||||| |||||||||||||| | | |||| || |||||||| || |||||||||||||||||    
T  41915 aaaatacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatccaac 41981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 623 - 693
Target Start/End: Complemental strand, 58439 - 58369
Alignment:
Q  623 ccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacac 693  Q
    ||||| |||||| ||||||| |||||||||| ||||||||||||||||| |||||||  ||||||||||||    
T  58439 ccaaagtacacatcaccaccaaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacac 58369  T

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Target: scaffold0050 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 597 - 691
Target Start/End: Complemental strand, 37043 - 36950
Alignment:
Q  597 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 691  Q
    ||||||| || ||||||| || |||| |||| |||||  |||||||||||||||||| ||||||| |||| |||||||||||||||| |||||||    
T  37043 aaaaacacccatgaggaccacacccaacaaaatacacgtcaccacctaaaacagactccttcacg-aaaccaccactgtaaaaacgacatccaac 36950  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 495 - 580
Target Start/End: Original strand, 3880232 - 3880317
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaagg 580  Q
    |||||| |||||||||||||||| ||| ||||| || |||||||||||||||| ||| |||||||| | | ||||||||| |||||    
T  3880232 tttttttaacaacaaattttattaaacaatcagatccctgctcaagacgaacagagaccggtgaaactgaaaatacaaacaaaagg 3880317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 495 - 591
Target Start/End: Complemental strand, 13423823 - 13423727
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    ||||| ||||| |||||||||||||||||| ||||| || ||||||||||||| ||| |  ||||| | ||||||||| ||||||||| ||| ||||    
T  13423823 tttttgaaacagcaaattttatttaaccattaggtccctcctcaagacgaacagagacctttgaaactgagaatacaatctaaaggcgtcgtatata 13423727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 653
Target Start/End: Original strand, 15120341 - 15120403
Alignment:
Q  591 accctgaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagact 653  Q
    ||||| |||||||||| ||||||||||  |||||||| |||||| ||||||||||||||||||    
T  15120341 accctaaaaaacatccatgaggacaacatccaccaaaatacacatcaccacctaaaacagact 15120403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 532 - 591
Target Start/End: Complemental strand, 6860457 - 6860398
Alignment:
Q  532 ctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 591  Q
    |||||||||| ||| |||||||||||||| ||||||||||||| |||| |||||| ||||    
T  6860457 ctgctcaagatgaatatagatcggtgaaactaagaatacaaacaaaagacgccgtatata 6860398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 609 - 667
Target Start/End: Original strand, 32935099 - 32935157
Alignment:
Q  609 gaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacg 667  Q
    ||||||||| ||||||||| || |||||||||||||||| ||||| ||| |||||||||    
T  32935099 gaggacaacacccaccaaaataaacaccaccacctaaaatagactccttaacgaaaacg 32935157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 696
Target Start/End: Original strand, 3880378 - 3880439
Alignment:
Q  636 caccacctaaaacagacttcttcacgaaaa-cgaccactgtaaaaacgatatccaacaccat 696  Q
    |||||||||||||| |||| ||  |||||| |||||||| ||||||||||||||||||||||    
T  3880378 caccacctaaaacaaacttttttccgaaaaacgaccactataaaaacgatatccaacaccat 3880439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 495 - 560
Target Start/End: Original strand, 16180477 - 16180541
Alignment:
Q  495 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaa 560  Q
    |||||||| || ||||||||||| ||  ||||| ||||||||||||||||||| ||||||||||||    
T  16180477 ttttttaatcagcaaattttattaaaa-atcagatctctgctcaagacgaacaaagatcggtgaaa 16180541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 583
Target Start/End: Original strand, 20701457 - 20701505
Alignment:
Q  535 ctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgc 583  Q
    ||||||||||||| |||||||||||| | ||||||||||| ||||||||    
T  20701457 ctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaggcgc 20701505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 636 - 690
Target Start/End: Original strand, 20701584 - 20701638
Alignment:
Q  636 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaa 690  Q
    ||||||||| |||||||   ||||||||| | |||||||||||||||||||||||    
T  20701584 caccacctataacagacccattcacgaaagcaaccactgtaaaaacgatatccaa 20701638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 619 - 695
Target Start/End: Original strand, 1422 - 1498
Alignment:
Q  619 cccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 695  Q
    ||||| ||| |||||  ||||||||||||| |||| || ||||| ||| ||||||||||||||||||||||||||||    
T  1422 cccacaaaaatacacgtcaccacctaaaactgactcctacacgagaacaaccactgtaaaaacgatatccaacacca 1498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 691
Target Start/End: Complemental strand, 19683 - 19621
Alignment:
Q  629 tacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 691  Q
    |||||| |||||||||||||| ||| |||| | ||||||||| || |||||||||||||||||    
T  19683 tacacatcaccacctaaaacaaactccttctcaaaaacgacctctataaaaacgatatccaac 19621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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