View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14655_low_11 (Length: 269)

Name: NF14655_low_11
Description: NF14655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14655_low_11
NF14655_low_11
[»] chr3 (2 HSPs)
chr3 (142-238)||(7778703-7778799)
chr3 (38-82)||(7778859-7778903)
[»] scaffold0062 (3 HSPs)
scaffold0062 (176-212)||(57946-57982)
scaffold0062 (176-212)||(70080-70116)
scaffold0062 (176-212)||(70945-70981)
[»] chr8 (2 HSPs)
chr8 (176-212)||(18688759-18688795)
chr8 (176-212)||(18689645-18689681)
[»] chr2 (3 HSPs)
chr2 (176-212)||(15709034-15709070)
chr2 (176-212)||(15721523-15721559)
chr2 (176-212)||(15722388-15722424)


Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 7778799 - 7778703
Alignment:
Q  142 cttttgtattattattatccttcgagtaagaactttttatgttcacattatggttgttaggggaatttaaactaactacgtaaagtattagtaattt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7778799 cttttgtattattattatccttcgagtaagaactttttatgttcacattatggttgttaggggaatttaaactaactacgtaaagtattagtaattt 7778703  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 7778903 - 7778859
Alignment:
Q  38 atacgaatacaaaatcacgacccacagcttgagaaaactgaatcc 82  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  7778903 atacgaatacaaaatcacgacccacaacttgagaaaactgaatcc 7778859  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 57982 - 57946
Alignment:
Q  176 ttttatgttcacattatggttgttaggggaatttaaa 212  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  57982 ttttatgttcacactatggttgttaggagaatttaaa 57946  T

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Target: scaffold0062; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 70116 - 70080
Alignment:
Q  176 ttttatgttcacattatggttgttaggggaatttaaa 212  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  70116 ttttatgttcacactatggttgttaggagaatttaaa 70080  T

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Target: scaffold0062; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 70981 - 70945
Alignment:
Q  176 ttttatgttcacattatggttgttaggggaatttaaa 212  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  70981 ttttatgttcacactatggttgttaggagaatttaaa 70945  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 18688795 - 18688759
Alignment:
Q  176 ttttatgttcacattatggttgttaggggaatttaaa 212  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  18688795 ttttatgttcacactatggttgttaggagaatttaaa 18688759  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 18689681 - 18689645
Alignment:
Q  176 ttttatgttcacattatggttgttaggggaatttaaa 212  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  18689681 ttttatgttcacactatggttgttaggagaatttaaa 18689645  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 15709070 - 15709034
Alignment:
Q  176 ttttatgttcacattatggttgttaggggaatttaaa 212  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  15709070 ttttatgttcacactatggttgttaggagaatttaaa 15709034  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 15721559 - 15721523
Alignment:
Q  176 ttttatgttcacattatggttgttaggggaatttaaa 212  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  15721559 ttttatgttcacactatggttgttaggagaatttaaa 15721523  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 15722424 - 15722388
Alignment:
Q  176 ttttatgttcacattatggttgttaggggaatttaaa 212  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  15722424 ttttatgttcacactatggttgttaggagaatttaaa 15722388  T

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