View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14655_low_12 (Length: 255)
Name: NF14655_low_12
Description: NF14655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14655_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 1861274 - 1861153
Alignment:
| Q |
6 |
acatttgtggtacaaaattttaaacccatacg----tcaaattagtgaaaccttttgagcatagtttaatcgattgaaaaataaattaataaaatcagtt |
101 |
Q |
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| T |
1861274 |
acatttgtggtacaaaattttaaacccatacgaaggtcaaattagtgaaaccttttgagcatagtttaatccattagaaaataaattaataaaatcagtt |
1861175 |
T |
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| Q |
102 |
caatttcgattcatttagacta |
123 |
Q |
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| T |
1861174 |
caattccgattcatttagacta |
1861153 |
T |
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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 146 - 243
Target Start/End: Complemental strand, 1861024 - 1860927
Alignment:
| Q |
146 |
caatcaataacttgatcaattttttccttaaaaagaataacttgatcaatttttgattcaatttattgaattaatcttcagtcgtctgattttcaaaa |
243 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
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| T |
1861024 |
caatcaataacttgatcaattttttccttaaaaaaaataacttgatcaatttttggttcaatttattgaattaatcttcgatcatctgattttcaaaa |
1860927 |
T |
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