View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14655_low_16 (Length: 238)
Name: NF14655_low_16
Description: NF14655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14655_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5420992 - 5420771
Alignment:
| Q |
1 |
tgcagcctaatccagtgacatatggaacaaacatttttcatgaaaaggaagaaacaaattcagatgtatcagaggagttatatgatgaaaagttatgcat |
100 |
Q |
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| T |
5420992 |
tgcagcctaatccagtgacatatggaacaaacatttttcatgaaaaggaagaaacaaattcagatgtatcagaggagttatatgatgaaaagttatgcat |
5420893 |
T |
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| Q |
101 |
aatttgttttgatgaacaacgcaactgtttctttgttccttgcggtcattgtgccacttgctatgactgtgcacaaaggtatacacaaaatctatgtttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5420892 |
aatttgttttgatgaacaacgcaactgtttctttgttccttgcggtcattgtgccacttgctatgactgtgcacaaaggtatacactaaatctatgtttg |
5420793 |
T |
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| Q |
201 |
aatttactatgagtttgataaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
5420792 |
aatttactatgagtttgataaa |
5420771 |
T |
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