View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14655_low_5 (Length: 515)

Name: NF14655_low_5
Description: NF14655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14655_low_5
NF14655_low_5
[»] chr5 (6 HSPs)
chr5 (23-499)||(2935240-2935730)
chr5 (316-390)||(10142070-10142144)
chr5 (296-354)||(43541899-43541958)
chr5 (317-360)||(43405435-43405478)
chr5 (319-372)||(27592549-27592602)
chr5 (319-372)||(30325971-30326024)
[»] chr8 (1 HSPs)
chr8 (265-386)||(34861226-34861351)
[»] chr1 (7 HSPs)
chr1 (298-405)||(28218123-28218233)
chr1 (316-390)||(2225236-2225310)
chr1 (315-390)||(41958095-41958170)
chr1 (244-360)||(15468262-15468387)
chr1 (317-390)||(1093168-1093241)
chr1 (258-295)||(51732393-51732430)
chr1 (316-372)||(41095703-41095759)
[»] chr3 (4 HSPs)
chr3 (300-387)||(138778-138866)
chr3 (319-390)||(46450077-46450148)
chr3 (240-297)||(48351550-48351607)
chr3 (295-342)||(41707511-41707559)
[»] scaffold0018 (1 HSPs)
scaffold0018 (316-371)||(27843-27898)
[»] chr7 (7 HSPs)
chr7 (298-372)||(7775030-7775105)
chr7 (317-372)||(44511031-44511086)
chr7 (304-390)||(8073369-8073458)
chr7 (316-391)||(22189948-22190025)
chr7 (298-403)||(6442162-6442270)
chr7 (316-361)||(12263530-12263575)
chr7 (298-342)||(32605391-32605436)
[»] chr4 (2 HSPs)
chr4 (329-372)||(1559824-1559867)
chr4 (298-402)||(47009187-47009294)
[»] chr6 (2 HSPs)
chr6 (319-372)||(4595772-4595825)
chr6 (317-390)||(34905346-34905421)
[»] chr2 (1 HSPs)
chr2 (318-354)||(38464211-38464247)


Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 23 - 499
Target Start/End: Complemental strand, 2935730 - 2935240
Alignment:
Q  23 caagtgaacgatggtgatggagtttcatgggtggagaattacactgcttcccgtccggtaaaaatacacactttaggaaacatttgactatttaagagta 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2935730 caagtgaacgatggtgatggagtttcatgggtggagaattacactgcttcccgtccggtaaaaatacacactttaggaaacatttgactatttaagagta 2935631  T
Q  123 tttgtaaaaatatgtttaatgagtgcaggcaaccttttctttgaaggagagtggcaacctaactcgctctacttatgtaaaatagtttgctttttattat 222  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2935630 tttgtaaaaatatgtttaacgagtgtaggcaaccttttctttgaaggagagtggcaacctaactcgctctacttatgtaaaatagtttgcattttattat 2935531  T
Q  223 gttt-------------tttgaggaataatacattctcttttgagcaatttctcaaatactcactcttttattgatttaaattattatactttaaaaatt 309  Q
    ||||             ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||    
T  2935530 gtttccacatgtaatgctttgaggaataatacattctcttttgaacaatttctctaatactcactcttttattggtttaaattattatactttgaaaatt 2935431  T
Q  310 gaattccacaaagtgatgagacatacattgattcca-ttcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtttttaaccttcctctcctc 408  Q
    ||||||||||||  ||||||||||||||| |||||| || ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  2935430 gaattccacaaaccgatgagacatacattaattccattttaataaataagtgggtgctaaagagtgtcgaaaagtgagtgtttttaaccttcctcttctc 2935331  T
Q  409 tgagatctatgttgcctttaaagaatcgtgaacgatttatccaacnnnnnnntattattcatgtcttgcatgtgacccataaacatctttt 499  Q
    ||| ||||||||||||||||||||||||||||||||||||| ||         || ||||||||||||||| |||||||||||||||||||    
T  2935330 tgaaatctatgttgcctttaaagaatcgtgaacgatttatctaataaaaagagatgattcatgtcttgcatatgacccataaacatctttt 2935240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 316 - 390
Target Start/End: Original strand, 10142070 - 10142144
Alignment:
Q  316 cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtt 390  Q
    ||||||||| || ||||||||||||||  || ||||||| ||||| |||||| ||||||| ||||||||||||||    
T  10142070 cacaaagtggtgggacatacattgattttatccaataaaagagtgagtgctatagagtgttgaaaaatgagtgtt 10142144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 43541958 - 43541899
Alignment:
Q  296 atactttaaaaattgaattc-cacaaagtgatgagacatacattgattccattcaataaa 354  Q
    ||||||| ||||||||| || |||||||||||||||||||||||||||  ||||||||||    
T  43541958 atactttgaaaattgaactcacacaaagtgatgagacatacattgattttattcaataaa 43541899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 360
Target Start/End: Complemental strand, 43405478 - 43405435
Alignment:
Q  317 acaaagtgatgagacatacattgattccattcaataaatgagtg 360  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||    
T  43405478 acaaagtggtgagacatacattgatttcattcaataaaagagtg 43405435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 27592549 - 27592602
Alignment:
Q  319 aaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 372  Q
    |||||| ||||||||||||||||| ||| |||||||  |||| |||||||||||    
T  27592549 aaagtggtgagacatacattgatttcatccaataaaatagtgagtgctaaagag 27592602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 30325971 - 30326024
Alignment:
Q  319 aaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 372  Q
    |||||| ||||||||||||||||| ||| |||||||  |||| |||||||||||    
T  30325971 aaagtggtgagacatacattgatttcatccaataaaatagtgagtgctaaagag 30326024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 265 - 386
Target Start/End: Original strand, 34861226 - 34861351
Alignment:
Q  265 aatactcactcttttattgatttaaattattat---actttaaaaattgaat-tccacaaagtgatgagacatacattgattccattcaataaatgagtg 360  Q
    |||||||||||| |||||| ||||||||||| |   ||||| |||||||||  | ||||||||| || |||||||||||||| ||| ||||||| |||||    
T  34861226 aatactcactctcttattggtttaaattattgtgggactttgaaaattgaacctacacaaagtggtgggacatacattgatttcatccaataaaagagtg 34861325  T
Q  361 ggtgctaaagagtgtcgaaaaatgag 386  Q
     |||||| ||||||| ||||| ||||    
T  34861326 agtgctagagagtgttgaaaagtgag 34861351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 298 - 405
Target Start/End: Original strand, 28218123 - 28218233
Alignment:
Q  298 actttaaaaattgaattc-cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaa--agagtgtcgaaaaatgagtgttttta 394  Q
    ||||| |||||||||| | ||||||||| ||||||||||||||||| ||| ||||||| |||||  ||||||  |||| || ||||||||||||||  ||    
T  28218123 actttgaaaattgaatccacacaaagtggtgagacatacattgatttcatccaataaaagagtgaatgctaaagagagggttgaaaaatgagtgttgcta 28218222  T
Q  395 accttcctctc 405  Q
    |||||||||||    
T  28218223 accttcctctc 28218233  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 390
Target Start/End: Complemental strand, 2225310 - 2225236
Alignment:
Q  316 cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtt 390  Q
    ||||||||| || |||||||||||||| ||| ||||||| |||||||||||| ||||||| ||||| ||||||||    
T  2225310 cacaaagtggtgggacatacattgatttcatccaataaaagagtgggtgctagagagtgttgaaaattgagtgtt 2225236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 41958170 - 41958095
Alignment:
Q  315 ccacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtt 390  Q
    ||||||| || || |||||||||||||| ||| ||||||||||||| |||||  ||||||| ||||| ||||||||    
T  41958170 ccacaaaatggtgggacatacattgatttcatccaataaatgagtgagtgcttgagagtgttgaaaagtgagtgtt 41958095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 360
Target Start/End: Complemental strand, 15468387 - 15468262
Alignment:
Q  244 tctcttttgagcaatttctcaaatactcactcttttattgatttaaattat--------tatactttaaaaattgaattc-cacaaagtgatgagacata 334  Q
    |||||||||| || | ||||||||||| ||||||||||| |||||||||||        || ||| | |||||||||  | |||||||| ||||||||||    
T  15468387 tctcttttgaacactatctcaaatacttactcttttattaatttaaattattgtgggtctacactatgaaaattgaacccacacaaagtaatgagacata 15468288  T
Q  335 cattgattccattcaataaatgagtg 360  Q
    ||||||||| ||| |||||| |||||    
T  15468287 cattgattctatttaataaaagagtg 15468262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 1093168 - 1093241
Alignment:
Q  317 acaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtt 390  Q
    |||||||| ||  ||||||||||||| |||  |||||| ||||| ||||||||||||||  |||||| ||||||    
T  1093168 acaaagtggtggaacatacattgatttcatctaataaacgagtgcgtgctaaagagtgtgcaaaaataagtgtt 1093241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 295
Target Start/End: Complemental strand, 51732430 - 51732393
Alignment:
Q  258 tttctcaaatactcactcttttattgatttaaattatt 295  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  51732430 tttctctaatactcactcttttattggtttaaattatt 51732393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 41095703 - 41095759
Alignment:
Q  316 cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 372  Q
    |||| ||||||| |||||||||||||| ||  ||||||||||||| |||||| ||||    
T  41095703 cacagagtgatgggacatacattgatttcacccaataaatgagtgagtgctagagag 41095759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 387
Target Start/End: Complemental strand, 138866 - 138778
Alignment:
Q  300 tttaaaaattgaattcc-acaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagt 387  Q
    |||||||||||||| |  ||||| || ||||||||||||||||| ||||||||||| ||||| |||||| ||||| | ||||| |||||    
T  138866 tttaaaaattgaatacatacaaaatggtgagacatacattgatttcattcaataaaagagtgagtgctagagagtcttgaaaactgagt 138778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 390
Target Start/End: Complemental strand, 46450148 - 46450077
Alignment:
Q  319 aaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtt 390  Q
    |||||| || ||||||||||||||||||  |||||| ||||| |||||| |||||||  |||| ||||||||    
T  46450148 aaagtggtgggacatacattgattccatctaataaaagagtgagtgctagagagtgttcaaaagtgagtgtt 46450077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 48351607 - 48351550
Alignment:
Q  240 acattctcttttgagcaatttctcaaatactcactcttttattgatttaaattattat 297  Q
    |||||||||||||| || |||||| |||||||  ||| |||||||||||||| |||||    
T  48351607 acattctcttttgaacattttctctaatactctttctcttattgatttaaatcattat 48351550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 41707511 - 41707559
Alignment:
Q  295 tatactttaaaaattgaattc-cacaaagtgatgagacatacattgatt 342  Q
    ||||||||||||||||||  | ||||||||||||| |||||||||||||    
T  41707511 tatactttaaaaattgaacccacacaaagtgatgaaacatacattgatt 41707559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 371
Target Start/End: Complemental strand, 27898 - 27843
Alignment:
Q  316 cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaaga 371  Q
    ||||||||| || |||||||||||||||||| ||||||| | ||| ||||||||||    
T  27898 cacaaagtggtgggacatacattgattccatccaataaaagcgtgagtgctaaaga 27843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 372
Target Start/End: Complemental strand, 7775105 - 7775030
Alignment:
Q  298 actttaaaaattgaattc-cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 372  Q
    ||||| ||||||||| || ||||||||| || |||||||||||||| ||| ||||||| ||||| |||||| ||||    
T  7775105 actttgaaaattgaactcacacaaagtggtgggacatacattgatttcatccaataaaagagtgagtgctatagag 7775030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 372
Target Start/End: Original strand, 44511031 - 44511086
Alignment:
Q  317 acaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 372  Q
    |||||||||||||||||||||||||| ||| |||||||  |||| |||||| ||||    
T  44511031 acaaagtgatgagacatacattgatttcatccaataaaaaagtgagtgctagagag 44511086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 390
Target Start/End: Original strand, 8073369 - 8073458
Alignment:
Q  304 aaaattgaa-ttccacaaagtgatgagacatacattgattccattcaataaatgagtgggtgcta--aagagtgtcgaaaaatgagtgtt 390  Q
    ||||||||| || ||||||||| || |||||||||||||| ||| | ||||| ||||| ||||||  |||| ||| ||||||||||||||    
T  8073369 aaaattgaacttacacaaagtggtgggacatacattgatttcatccgataaaagagtgagtgctaggaagaatgttgaaaaatgagtgtt 8073458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 391
Target Start/End: Complemental strand, 22190025 - 22189948
Alignment:
Q  316 cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgct--aaagagtgtcgaaaaatgagtgttt 391  Q
    ||||||||| || | |||||||||||| ||| ||||||| ||||| |||||  | ||||||| |||||||||||||||    
T  22190025 cacaaagtggtgggccatacattgatttcatccaataaaagagtgagtgctagagagagtgttgaaaaatgagtgttt 22189948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 403
Target Start/End: Complemental strand, 6442270 - 6442162
Alignment:
Q  298 actttaaaaattgaattcc-acaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag--tgtcgaaaaatgagtgttttta 394  Q
    ||||| |||||||||| || ||||| || ||  ||||||||||||| ||| |||||||||| || ||| || ||||  ||| |||||||||||||| |||    
T  6442270 actttgaaaattgaatccccacaaaatggtggaacatacattgatttcatacaataaatgactgagtgatagagagagtgttgaaaaatgagtgttgtta 6442171  T
Q  395 accttcctc 403  Q
    || ||||||    
T  6442170 acattcctc 6442162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 12263530 - 12263575
Alignment:
Q  316 cacaaagtgatgagacatacattgattccattcaataaatgagtgg 361  Q
    |||||||||||| |||||||||||||||||| | ||||| ||||||    
T  12263530 cacaaagtgatgggacatacattgattccatccgataaaagagtgg 12263575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 32605436 - 32605391
Alignment:
Q  298 actttaaaaattgaattc-cacaaagtgatgagacatacattgatt 342  Q
    |||||||||||||||| | |||||||| ||||||||||||||||||    
T  32605436 actttaaaaattgaatccacacaaagtaatgagacatacattgatt 32605391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 1559824 - 1559867
Alignment:
Q  329 gacatacattgattccattcaataaatgagtgggtgctaaagag 372  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||    
T  1559824 gacatacgttgattccattcaataaaggagtgagtgctaaagag 1559867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 402
Target Start/End: Complemental strand, 47009294 - 47009187
Alignment:
Q  298 actttaaaaattgaattc-cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgcta--aagagtgtcgaaaaatgagtgttttta 394  Q
    ||||| ||||||||| || ||||||| | ||||||| ||||| |||  || ||||||| ||||| ||||||  |||||||| ||||||||||| || |||    
T  47009294 actttgaaaattgaactcacacaaagcggtgagacaaacattaattttatccaataaaagagtgagtgctagaaagagtgttgaaaaatgagttttgtta 47009195  T
Q  395 accttcct 402  Q
    || |||||    
T  47009194 acattcct 47009187  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 4595825 - 4595772
Alignment:
Q  319 aaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 372  Q
    |||||| ||||||||||||||||| || |||||||| ||||| |||||| ||||    
T  4595825 aaagtggtgagacatacattgatttcactcaataaaagagtgagtgctagagag 4595772  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 34905421 - 34905346
Alignment:
Q  317 acaaagtgatgagacatacattgattccattcaataaatgagtgggtgct--aaagagtgtcgaaaaatgagtgtt 390  Q
    |||||||| || |||||||||||||| ||| ||||||| ||||| ||| |  | ||||||| ||||||||||||||    
T  34905421 acaaagtggtgggacatacattgatttcatccaataaaagagtgagtgttagagagagtgttgaaaaatgagtgtt 34905346  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 38464247 - 38464211
Alignment:
Q  318 caaagtgatgagacatacattgattccattcaataaa 354  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  38464247 caaagtgatgagacatacattgatttcatacaataaa 38464211  T

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