View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14656_high_1 (Length: 744)
Name: NF14656_high_1
Description: NF14656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14656_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 608; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 33 - 725
Target Start/End: Original strand, 41805397 - 41806096
Alignment:
| Q |
33 |
ccatttgttggaggagctgcagggtaaaagggaagaggaattaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaagggggaa-tcaga |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41805397 |
ccatttgttggaggagctgcagggtaaaagggaagaggaattaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaagggggaaatcaga |
41805496 |
T |
|
| Q |
132 |
gaagatgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagagaaagaggagggtatgttgaacttggga |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41805497 |
gaagatgaatgtgacaacaattgttgttgaacttaagaagagagttgaagagctagagaagttgatggaagagaaagaggagggtatgttgaacttggga |
41805596 |
T |
|
| Q |
232 |
gaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaaaggaattcatatcaaagactcgccggg |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41805597 |
gaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaaaggaattcatatcaaagactcgccggg |
41805696 |
T |
|
| Q |
332 |
gccagagagcaatgtgaacccatctatannnnnnnnatgcaactttgtccaattaggtactgtcgtgatttgacaaacatgagtatgtgtatagttatan |
431 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41805697 |
gccagagagcagtgtgaacccatctatattttttttatgcaactttgtccaattaggtactgtcgtgatttgacaaacatgagtatgtgtatagttatat |
41805796 |
T |
|
| Q |
432 |
nnnnnnccctgtat------caaagttagttctgttcttctcttgaatttgaattgaataatcttagtgacgtcttattgttttgttcagtatagaacgt |
525 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41805797 |
ttttttccctgtatcagtagcaaagttagttctgttcttctcttgaatttgaattgaataatcttagtgacgtcttattgttttgttcagtatagaacgc |
41805896 |
T |
|
| Q |
526 |
tgggttaacatgtcccactatcaaaattttccagttcttacccgtctttgatgctttttattttacattttatcatatatttctagaaactagctagcag |
625 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41805897 |
tgggttaacatgtcccactatcaaaattttccagttcttacccgtctttgatgctttttattttacattttatcatatatttctagaaactagctagcag |
41805996 |
T |
|
| Q |
626 |
tgatagttaacttgattaattaagtcttcttattccataaaggacttggtcttgtatagaggctctggggatcagtagcaggacctctactgatgctgag |
725 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41805997 |
tgatagttaacttgattaattaagtcttcttattccataaaggacttgctcttgtatagaggctctggggatcagtagcaggacctctactgatgctgag |
41806096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 36 - 342
Target Start/End: Original strand, 41799015 - 41799321
Alignment:
| Q |
36 |
tttgttggaggagctgcagggtaaaagggaagaggaattaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaagggggaatcagagaag |
135 |
Q |
| |
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|||||| ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| |
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| T |
41799015 |
tttgttagaggaactgcagggtaaaaaggaaggggaattaactctgagggaaaaggttgagaagctagaggtgaaggcaagaaaggaggaatcagagaag |
41799114 |
T |
|
| Q |
136 |
atgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagagaaagaggagggtatgttgaacttgggagagg |
235 |
Q |
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|||||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||||| || || ||| | |||||||||| |
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| T |
41799115 |
atgaatgtgacagcaactgttgttgaacttaagaagacagttggagagctagagaagtcgatgaaagagaaagaggaaggcatattggatttgggagagg |
41799214 |
T |
|
| Q |
236 |
aaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaaaggaattcatatcaaagactcgccggggcca |
335 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||| | ||| | | |||| ||| |||||| ||||||||||||| ||| ||||||| |
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| T |
41799215 |
aaaagagggaggccatcaggcagctctgtttgtggattgattatcaccgtgagagtagtgaccgtctcaaggaaatcatatcaaagacacgcaggggcca |
41799314 |
T |
|
| Q |
336 |
gagagca |
342 |
Q |
| |
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||||||| |
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| T |
41799315 |
gagagca |
41799321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 33 - 340
Target Start/End: Original strand, 41812228 - 41812535
Alignment:
| Q |
33 |
ccatttgttggaggagctgcagggtaaaagggaagaggaattaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaagggggaatcagag |
132 |
Q |
| |
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|||||| ||||||||| |||||||||||| |||||||| || ||||||| | || ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41812228 |
ccatttattggaggagttgcagggtaaaaaggaagagggatcaactctgcagaaagaggttgaaaagctagaggcaaaggcaagaaaggaggaatcagag |
41812327 |
T |
|
| Q |
133 |
aagatgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagagaaagaggagggtatgttgaacttgggag |
232 |
Q |
| |
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||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||| |||||||||| ||||||||||||| || || ||| | ||||||| |
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| T |
41812328 |
aagatgaatgtgacagcaactgttgatgaacttaagaagacagttgaagagctacagaagttgataaaagagaaagaggaaggaatattggatttgggag |
41812427 |
T |
|
| Q |
233 |
aggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaaaggaattcatatcaaagactcgccgggg |
332 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| ||||||||||||| | ||| | |||| |||||| |||| | |||| |||||||||| |||| |
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| T |
41812428 |
aggaaaagagggaggccatcaggcagctctgtttgttgattgattatcaccgcgagtgtaatgtctatctcaagggaatcatctcaaagactcaaagggg |
41812527 |
T |
|
| Q |
333 |
ccagagag |
340 |
Q |
| |
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|||||||| |
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| T |
41812528 |
ccagagag |
41812535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 449 - 595
Target Start/End: Original strand, 41799488 - 41799633
Alignment:
| Q |
449 |
agttagttctgttcttctcttgaatttgaattgaataatcttagtgacgtcttattgttttgttcagtatagaacgttgggttaacatgtcccactatca |
548 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| | ||||||||||| ||| | |
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| T |
41799488 |
agttagtcctgttcttctcttgaatttgaattgaataatcttagtgaggtcttattgttttgttcagtatacaaatttggatgaacatgtcccattatta |
41799587 |
T |
|
| Q |
549 |
aaattttccagttcttacccgtctttgatgctttttattttacattt |
595 |
Q |
| |
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|| ||| ||| |||||||||||||||||||| ||||||||||||||| |
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| T |
41799588 |
aattttgccaattcttacccgtctttgatgc-ttttattttacattt |
41799633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 595 - 692
Target Start/End: Original strand, 41799727 - 41799824
Alignment:
| Q |
595 |
ttatcatatatttctagaaactagctagcagtgatagttaacttgattaattaagtcttcttattccataaaggacttggtcttgtatagaggctctg |
692 |
Q |
| |
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|||||||| ||| |||||||||||| ||| ||||||||||||||||| |||||| |||||||||| | ||||||| ||||| |||||| ||||| |
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| T |
41799727 |
ttatcatagattattagaaactagcttgcaacgatagttaacttgattagttaagtgttcttattccgcataggacttactcttgcatagagactctg |
41799824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 646 - 716
Target Start/End: Complemental strand, 278904 - 278834
Alignment:
| Q |
646 |
taagtcttcttattccataaaggacttggtcttgtatagaggctctggggatcagtagcaggacctctact |
716 |
Q |
| |
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||||| || |||||||| ||| ||||| ||||| |||||||||||| ||||||||||||||||||||||| |
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|
| T |
278904 |
taagtgttgttattccacaaaagacttactcttgcatagaggctctgtggatcagtagcaggacctctact |
278834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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