View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14656_high_18 (Length: 250)
Name: NF14656_high_18
Description: NF14656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14656_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 29151962 - 29151852
Alignment:
| Q |
36 |
gacatctgtgtttaacacacttataataagtatctgggtgtgaatttttcattggttttggacaatcatcatcaacttcacattccatatatgctgtgat |
135 |
Q |
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| T |
29151962 |
gacatctgtgtttaacacacttataataagtatctgggtgtgaatttttcattggttttggacaatcatcatcaacttcacattcaatatatgctgtgat |
29151863 |
T |
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| Q |
136 |
gaaaaatataa |
146 |
Q |
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| T |
29151862 |
gaaaaatataa |
29151852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 138 - 250
Target Start/End: Complemental strand, 29151515 - 29151403
Alignment:
| Q |
138 |
aaaatataataaaataatgttagtaaagcatgataaaagatgttgtacaaactatgaagtaactaaggaaattaaaaaaggataaaaacaaatgtcttac |
237 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29151515 |
aaaatataataaaataatgttagtaaagaatgataaaagatgttgtacaaactatgaagtaactaaggaaattaaaaaaggataaaaaaaaatgtcttac |
29151416 |
T |
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| Q |
238 |
caccaccaacttc |
250 |
Q |
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||||||||||||| |
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| T |
29151415 |
caccaccaacttc |
29151403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 30801704 - 30801668
Alignment:
| Q |
139 |
aaatataataaaataatgttagtaaagcatgataaaa |
175 |
Q |
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||||||||||||||||||||| |||| |||||||||| |
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| T |
30801704 |
aaatataataaaataatgttactaaaacatgataaaa |
30801668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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