View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14656_high_6 (Length: 396)
Name: NF14656_high_6
Description: NF14656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14656_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 76 - 374
Target Start/End: Complemental strand, 53465220 - 53464925
Alignment:
| Q |
76 |
tattctcattatctggttggtttaagtgaagaaaagtattaggatgaaaattattcatgattatagctattgattaagagagaaagagagaggaaagaag |
175 |
Q |
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| T |
53465220 |
tattctcattatctggttggtttaagtgaagaaaagtattaggatgaaaattattcatgattatagctattgattaagagagaaagagagatgaaagaag |
53465121 |
T |
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| Q |
176 |
ttttagtggtataatggtttaaaagttgaaactcaaagtgtactctatatatggaggggaatagtgtgtgaatgtgaaacataaaagagttttaattcaa |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
53465120 |
ttttagtggtataatggtttaaaagttgaaactcaaagtgta--ctatatatggaggggaatagtgtgtgaatgtgaaacat-aaagagttttaattcaa |
53465024 |
T |
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| Q |
276 |
ctcaactcaactaaactcaagggttcattgttccttgcaagacagaaatagtagaaaaataagggagggacatatatctgcaagatcagtggagatcct |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53465023 |
ctcaactcaactaaactcaagggttcattgttccttgcaagacagaaatagtagaaaaataagggagggacatatatctgcaagatcagtggagatcct |
53464925 |
T |
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