View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14656_high_7 (Length: 393)
Name: NF14656_high_7
Description: NF14656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14656_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Original strand, 55334469 - 55334839
Alignment:
| Q |
17 |
ataattatggacgtgtaacatcataaaaaattgaataattaaatatgttcaacttcaaataagtttctagcttaattgctacaatagtttttgacaagtt |
116 |
Q |
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| T |
55334469 |
ataattatggacgtgtaacatcataaaaaattgaataattaaatatgttcaacttcaaataagtttctagcttaattgctacaatagtttttgacaagtt |
55334568 |
T |
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| Q |
117 |
ttatcgtttagcacgggttttgttattaaattgtttcttcagttgagtactgaaacaaaaaacgtgtgatcacttggattgtttagcaagaaacagactt |
216 |
Q |
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| T |
55334569 |
ttatcgtttagcacgggttttgttattaaattgtttcttcagttgagtactgaaacaaaaaacgtgtgatcacttggattgtttagcaagaaacagactt |
55334668 |
T |
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| Q |
217 |
attatatcacatatatataacgaaaagaagataaa-tttataacaatggaggacatcctagctaaaaggattttggacatggccaccgtnnnnnnntatt |
315 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55334669 |
attatatcac----atataacgaaaagaagataaacgttataacaatggaggacatcctagctaaaaggattttggacatggccaccgtaaaaaaatatt |
55334764 |
T |
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| Q |
316 |
attattatatttttactggaaactcactcagtatcacgacaaaactataaatatttttaaccgtagtattcatct |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55334765 |
attattatatttttactggaaactcactcagtatcacgacaaaactataaatatttttaaccgtagtattcatct |
55334839 |
T |
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