View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14656_high_8 (Length: 370)
Name: NF14656_high_8
Description: NF14656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14656_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 3 - 351
Target Start/End: Complemental strand, 50042301 - 50041953
Alignment:
| Q |
3 |
tcgaagaatattaccctaaggctctttaatttctgtttagcatgtcgagaacagcataagcagctttttgacaatgctctttctcttcatctaatgctgt |
102 |
Q |
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| T |
50042301 |
tcgaataatattaccctaaggctctttaatttctgtttagcatgtcgagaacagcataagcagctttttgacaatgctctttctcttcatctaatgctgt |
50042202 |
T |
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| Q |
103 |
tttcctctccatagcagaacctttacatttctcgatctcttcctcaatcactgcagaattttgattaatctcactgcaaaaatagtacaaaaacaatatt |
202 |
Q |
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| T |
50042201 |
tttcctctccatagcagaacctttacatttctcgatctcttcctcaatcactgcagaattttgattaatctcactgcaaaaatagtacaaaaacaatatt |
50042102 |
T |
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| Q |
203 |
agatctgaaatcgaaaaacaatcactcaattttgttatcttataatataacaaaaatagtaatgatgtaaaaaatgaagaaataattatgattaagtaac |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50042101 |
agatctgaaatcgaaaaacaatcactcaattttgttatcttataacataacaaaaatagtaatgatgtaaaaaatgaagaaataattatgattaagtaac |
50042002 |
T |
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| Q |
303 |
taacgcgatcatcttaagcatgttctccattatagattgagcttcgttt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50042001 |
taacgcgatcatcttaagcatgttctccattatagattgagcttcgttt |
50041953 |
T |
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