View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14656_low_1 (Length: 1155)
Name: NF14656_low_1
Description: NF14656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14656_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 743; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 341 - 1144
Target Start/End: Complemental strand, 21179838 - 21179035
Alignment:
| Q |
341 |
tattcaaggcttgggatctatggaccaacaattctggaatggacttgattgattcaaaactggatgatatctccaacaagcatttagtaccaaaatacgt |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21179838 |
tattcaaggcttgggatctatggaccaacaattctggaatggacttgattgattcaaaactggatgatatctccaacaagcatttagtaccaaaatacgt |
21179739 |
T |
|
| Q |
441 |
gaatattggacttctatgtgttcaacaaagtccagaagatagaccaaccatgtctgatgttgtaacaatgattgggaatgacactacatcccttcctagt |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21179738 |
gaatattggacttctatgtgttcaacaaagtccagaagatagaccaaccatgtctgatgttgtaacaatgattgggaatgacactacatcccttcttagt |
21179639 |
T |
|
| Q |
541 |
ccaaagccaccggcatttcaaaatgtgagaggtattgaaaattcaagactttctagaagcatagaagaaaacgtttctgtgaatgttgtcacaaattcac |
640 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21179638 |
ccaaagccaccggcatttcaaaatgtgagaggtattgaaaattcaagactctctagaagcatagaagaaaacgtttctgtgaatgttgtcacaaattcac |
21179539 |
T |
|
| Q |
641 |
tagttgaagcaagatgagtttagagtgacttcactagttttgaaaattaaaataacttacttgtttgagtaatttgaaaaacttgttatgtccatgctac |
740 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21179538 |
tagttgaagcaagatgagtttagagtgacttcactagttttgagaattaaaataacttacttgtttgagtaatttgaaaaacttgttatgtccatgctac |
21179439 |
T |
|
| Q |
741 |
tatatttttctttcttttattatcttccaatgttgtgttttagtcatcgannnnnnngtgtgaatcggatatgatctccacacaactgcatagactaatc |
840 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21179438 |
tatatttttctttctttttttatcttccaatgttgtgttttagtcatcgatttttttgtgtgaatcggatatgatctccacacaactgcatagactaatc |
21179339 |
T |
|
| Q |
841 |
actcaagtcaggtagtgaatgacaaagctctccttcaagagatttaaggcaactgctacatttaaatggatggattagaacccatgacctctggttaagt |
940 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21179338 |
actcaagtcaggtagtggatgacaaagctctccttcaagagatttaaggcaactgctacatttaaagggatggattagaacccatgacctctggttaagt |
21179239 |
T |
|
| Q |
941 |
tagaagaaatatcttatcatcccatccaagtgttcttgggtgttttagtcgtcaaattgagttaataaagaatgagtttattccaatcgctaattgaaag |
1040 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21179238 |
tagaagaaatatcttatcatcccatccaagtgctcttgagtgttttagtcgtcaaattgagttaagaaagaatgagtttattccaatcgctaattgaaag |
21179139 |
T |
|
| Q |
1041 |
gattagtggtattgagatagaatcaagttgtatgaatgtaatagtattgtactacattgtttggattagaatgtagatatgtgatgagattagatgatgt |
1140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21179138 |
gattagtggtattgagatagaatcaagttgtatgaatgtaatagtattgtactacattgtttggattagaatgtagatatgtgatgagattagatgatat |
21179039 |
T |
|
| Q |
1141 |
ccat |
1144 |
Q |
| |
|
|||| |
|
|
| T |
21179038 |
ccat |
21179035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 15 - 293
Target Start/End: Complemental strand, 21180184 - 21179908
Alignment:
| Q |
15 |
aagtaatataaagtaatatattcttgccttcatttgcaatgaaaatttgcttcaaaattttatatcaaataagaactctttaatgatggtttttcagtgg |
114 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21180184 |
aagtaatataaactaatat--tcttgccttcatttgcaatgaaaatttgcttcaaaattttatatcaactaagaactctttaatgatggtttttcagtgg |
21180087 |
T |
|
| Q |
115 |
ctacatgtccccagaatatgctatggaaggcgtttactcgattaaatctgacgtgtttagctttggagtccttttgttagagattataagcggaaagaag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21180086 |
ctacatgtccccagaatatgctatggaaggcgtttattcgattaaatctgacgtgtttagctttggagtccttttgttagagattataagcggaaagaag |
21179987 |
T |
|
| Q |
215 |
aatactggtttttatcaaacaaattccttcaatcttcttggatatgtaagttcctaatttcaactcaacttatcttaat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21179986 |
aatactggtttttatcaaacaaattccttcaatcttcttggatatgtaagttcctaaattcaactcaacttatcttaat |
21179908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 207; E-Value: 1e-112
Query Start/End: Original strand, 314 - 679
Target Start/End: Original strand, 23190162 - 23190528
Alignment:
| Q |
314 |
ataattttgggttctttacttgctgaatattcaaggcttgggatctatggaccaacaattctggaatggacttgattgattcaaaactggatgatatctc |
413 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||| |||| ||| ||||||||||||| | ||||| ||| || ||||||||||||| |
|
|
| T |
23190162 |
ataattttgggttctttacttgttgaatactcaaggcttgggatctttggaacaatgattctggaatggagctaattgactcagaattggatgatatctc |
23190261 |
T |
|
| Q |
414 |
caacaagcatttagtaccaaaatacgtgaatattggacttctatgtgttcaacaaagtccagaagatagaccaaccatgtctgatgttgtaacaatgatt |
513 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
23190262 |
caacaagcatttagtaccaagatacgtgaatatcggacttctctgtgttcaacaaagtccggaagataggccaaccatgtctgatgttgtatcaatgatt |
23190361 |
T |
|
| Q |
514 |
gggaatgacactacatcccttcctagtccaaagccaccggcatttcaaaatgtgagaggtattgaaaattcaagactttctagaagcatagaagaaaacg |
613 |
Q |
| |
|
|| ||||||||| |||||||||| | |||||||||||| ||||||||||| ||||||||||||||| |||||||||| || | ||||||||||| |||| |
|
|
| T |
23190362 |
ggtaatgacactgcatcccttccgattccaaagccaccagcatttcaaaacgtgagaggtattgaatattcaagactctcaaaaagcatagaaggaaaca |
23190461 |
T |
|
| Q |
614 |
tttctgtgaatgttgtcacaaattcactagttgaagcaagatgag-tttagagtgacttcactagtt |
679 |
Q |
| |
|
||||| |||||| ||||| ||||||| ||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
23190462 |
tttctctgaatggcatcacagattcactcattgaagcaagatgagttttagagtgacttcgctagtt |
23190528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 314 - 669
Target Start/End: Original strand, 23182786 - 23183142
Alignment:
| Q |
314 |
ataattttgggttctttacttgctgaatattcaaggcttgggatctatggaccaacaattctggaatggacttgattgattcaaaactggatgatatctc |
413 |
Q |
| |
|
|||||||||||||||||||||| ||| || |||||||||||||||| ||||||||| ||||||||||||| | ||||||||| || |||||||||| || |
|
|
| T |
23182786 |
ataattttgggttctttacttgttgattactcaaggcttgggatctttggaccaacgattctggaatggagctaattgattcagaattggatgatatatc |
23182885 |
T |
|
| Q |
414 |
caacaagcatttagtaccaaaatacgtgaatattggacttctatgtgttcaacaaagtccagaagatagaccaaccatgtctgatgttgtaacaatgatt |
513 |
Q |
| |
|
||||||||||||||||| || |||||||||||| |||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||| ||||| || |
|
|
| T |
23182886 |
caacaagcatttagtactaagatacgtgaatatcggacttctctgtgttcaacaaagtccggatgataggccaaccatgtctgatgttgtatcaatgttt |
23182985 |
T |
|
| Q |
514 |
gggaatgacactacatcccttcctagtccaaagccaccggcatttcaaaatgtgagaggtattgaaaattcaagactttctagaagcatagaagaaaacg |
613 |
Q |
| |
|
|| ||||||||| |||| ||||| | |||||||||||| |||||||||||||||||||| ||| ||| ||||||||| || | ||||||||||| |||| |
|
|
| T |
23182986 |
ggtaatgacactgcatcgcttccgattccaaagccaccagcatttcaaaatgtgagaggcattaaaagttcaagactctcaaaaagcatagaaggaaaca |
23183085 |
T |
|
| Q |
614 |
tttctgtgaatgttgtcacaaattcactagttgaagcaagatgag-tttagagtgac |
669 |
Q |
| |
|
|||||||||||| ||||| ||||| | ||||||||||||||| ||||||||||| |
|
|
| T |
23183086 |
tttctgtgaatggcatcacagattcagtcattgaagcaagatgagttttagagtgac |
23183142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 82 - 276
Target Start/End: Original strand, 23182482 - 23182675
Alignment:
| Q |
82 |
aataagaactctttaatgatggtttttcagtggctacatgtccccagaatatgctatggaaggcgtttactcgattaaatctgacgtgtttagctttgga |
181 |
Q |
| |
|
||||| ||||||||| | |||||||| |||||||||||||| || |||||||||||||||||| ||| ||| ||||||| ||||| || ||||||||| |
|
|
| T |
23182482 |
aataataactctttattcttggttttt-agtggctacatgtctcctgaatatgctatggaaggccttttctcagttaaatccgacgtcttcagctttgga |
23182580 |
T |
|
| Q |
182 |
gtccttttgttagagattataagcggaaagaagaatactggtttttatcaaacaaattccttcaatcttcttggatatgtaagttcctaatttca |
276 |
Q |
| |
|
|| |||||||||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| |||| |
|
|
| T |
23182581 |
gtgcttttgttagagattataagtggcaagaagaatactggtttttatcaaacaagctctttcaatcttcttggatatgtaagtacctaaattca |
23182675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 82 - 276
Target Start/End: Original strand, 23189859 - 23190052
Alignment:
| Q |
82 |
aataagaactctttaatgatggtttttcagtggctacatgtccccagaatatgctatggaaggcgtttactcgattaaatctgacgtgtttagctttgga |
181 |
Q |
| |
|
||||| ||||||||| | |||||||| |||||||||||||| || |||||||||||||||||| ||| ||| ||||||| ||||| |||||||||||| |
|
|
| T |
23189859 |
aataataactctttattcttggttttt-agtggctacatgtctcctgaatatgctatggaaggccttttctcagttaaatccgacgtctttagctttgga |
23189957 |
T |
|
| Q |
182 |
gtccttttgttagagattataagcggaaagaagaatactggtttttatcaaacaaattccttcaatcttcttggatatgtaagttcctaatttca |
276 |
Q |
| |
|
|| ||| |||||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| |||| |
|
|
| T |
23189958 |
gttcttctgttagagattataagtggcaagaagaatactggtttttatcaaacaagctctttcaatcttcttggatatgtaagtacctaaattca |
23190052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University