View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14656_low_13 (Length: 352)
Name: NF14656_low_13
Description: NF14656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14656_low_13 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 7 - 352
Target Start/End: Complemental strand, 43054974 - 43054629
Alignment:
| Q |
7 |
atttcgtcaagacaagaagaatagcaatcccatgaccggtgttttttctggtcaaaaactattgatgctcgacaatgatcaaatttcggagttcaacaaa |
106 |
Q |
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| T |
43054974 |
atttcgtcaagacaagaagaatagcaatcccatgaccggtgttttttctggtcaaaaactattgatgctcgacaatgatcaaatttcggagttcaacaaa |
43054875 |
T |
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| Q |
107 |
gataagaatgttggagtttatgatatctatgtgaagctctactttaggattaggtttaaacttggagactccatatccagaaagttcaaacctaaggtca |
206 |
Q |
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| T |
43054874 |
gataagaatgttggagtttatgatatctatgtgaagctctactttaggattaggtttaaacttggagactccatatccagaaagttcaaacctaaggtca |
43054775 |
T |
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| Q |
207 |
aatgcgacctcacagttcctttgagcactcgtaatgcaactgactttaccttcattcgacttatacccaccaagtgtgatgttgagttctaagtcctaag |
306 |
Q |
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| T |
43054774 |
aatgcgacctcacagttcctttgagcactcgtaatgcaactgactttaccttcattcgacttatacccaccaagtgtgatgttgagttctaagttctaag |
43054675 |
T |
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| Q |
307 |
ctagtaatttcttgaaattttatttgaatttctttcttctatctca |
352 |
Q |
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| T |
43054674 |
ctagtaatttcttgaaattttatttgaatttctttcttctatctca |
43054629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 43062158 - 43062002
Alignment:
| Q |
74 |
ctcgacaatgatcaaatttcggagttcaacaaagataagaatgttggagtttatgatatctatgtgaagctctactttaggattaggtttaaacttggag |
173 |
Q |
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| T |
43062158 |
ctcgacaatgatcaagtctcggaattcagcaaagacaagagtgttggagtttatggtatctatgtgaagctctacttcaggattaggttcaaacttggag |
43062059 |
T |
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| Q |
174 |
actccatatccagaaagttcaaacctaaggtcaaatgcgacctcacagttcctttga |
230 |
Q |
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| T |
43062058 |
actcgatatctcgcacatacaagcctaaggtcaaatgtgacctcaaagttccattga |
43062002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 43024230 - 43024146
Alignment:
| Q |
66 |
tattgatgctcgacaatgatcaaatttcggagttcaacaaagataagaatgttggagtttatgatatctatgtgaagctctactt |
150 |
Q |
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| T |
43024230 |
tattgatgctcgacaataatcaagtctctgagtttaacaaagataagagtgttgaagtttatgatatctatgtgaaactctactt |
43024146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 72 - 171
Target Start/End: Complemental strand, 43049375 - 43049276
Alignment:
| Q |
72 |
tgctcgacaatgatcaaatttcggagttcaacaaagataagaatgttggagtttatgatatctatgtgaagctctactttaggattaggtttaaacttgg |
171 |
Q |
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| T |
43049375 |
tgctcgacagcgatcaagtctccgagtttaacaaagacaagagtgatgaagtttatgatatctatgtgaggctttactttaggattaggttcagacttgg |
43049276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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