View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14656_low_15 (Length: 311)
Name: NF14656_low_15
Description: NF14656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14656_low_15 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 28)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 4 - 296
Target Start/End: Original strand, 5352975 - 5353267
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5352975 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttagcaacacatttttaaggccatatgaagttatgt |
5353074 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaa |
203 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5353075 |
tattttgggttgacgtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaa |
5353174 |
T |
|
| Q |
204 |
ggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctgtgaaagtaaagagggctcaaaatt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5353175 |
ggttaaccaatttggataactatcaccagggaggaaacaaccaccacttccattaacatccatattctgtgaaagtaaagagggctcaaaatt |
5353267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 4 - 272
Target Start/End: Original strand, 5100930 - 5101198
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||||||||||||| | ||||||||| |||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||| ||| ||||||| |
|
|
| T |
5100930 |
tcatcttcaaaggagactaatgcctcgctcttatagagctgaatggtggcctttgtgtaatttttcactaacacatttttaaggccacttgatgttatgt |
5101029 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaa |
203 |
Q |
| |
|
||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||| || || |
|
|
| T |
5101030 |
tatctggggttgaagtatagacaatgcacatcattgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaaccttccgaaagaaa |
5101129 |
T |
|
| Q |
204 |
ggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||| | ||| ||||| |||||||| |
|
|
| T |
5101130 |
ggttaaccaatttggataactatcaccaggaagcaaacaaccaccactactattgacatctatattctg |
5101198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 4 - 272
Target Start/End: Original strand, 5136031 - 5136299
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||||||||||||| |||||| || ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
5136031 |
tcatcttcaaaggaggctaatgcttcgctcttgtagagctgaatggtggcctttgtgtaattttttaccaacacatttttaaggccacttgatgttatgt |
5136130 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaa |
203 |
Q |
| |
|
||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||| || || |
|
|
| T |
5136131 |
tatctggggttgaagtatagacaatgcacatcattgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaaccttccgaaagaaa |
5136230 |
T |
|
| Q |
204 |
ggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||| | ||| ||||| |||||||| |
|
|
| T |
5136231 |
ggttaaccaatttggataactatcaccaggaagcaaacaaccaccacttctattgacatctatattctg |
5136299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 278
Target Start/End: Complemental strand, 5439194 - 5438920
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
||||||||||| || | || ||||| |||||||| ||||||||||| |||||||||| |||| | ||||| |||||| |||||| || ||| ||||||| |
|
|
| T |
5439194 |
tcatcttcaaaagagactacagcctcactcttatagagctgaatggtggcctttgtgtgatttatcaccaatacatttataaggctatctgatgttatgt |
5439095 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaa |
203 |
Q |
| |
|
||| | ||||||| ||||| ||||||||||| || | |||| |||||||||||||| ||||||| |||||||||||||||||||||||||| | || |
|
|
| T |
5439094 |
tatccggagttgaagaatagacaatgcacatcaatgacatcaaattacgcccttccacttgagggacttgaaaagttacagaagaaccttcagaattaaa |
5438995 |
T |
|
| Q |
204 |
ggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctgtgaaag |
278 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||| |||| |||||||||| |||||||||||||||||||| |
|
|
| T |
5438994 |
ggttaaccaatttggataactatcaccggggagaaaacgaccatcactcccattgacatccatattctgtgaaag |
5438920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 4 - 296
Target Start/End: Original strand, 5156125 - 5156418
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| | |||| |||||||||||| | |||| | |
|
|
| T |
5156125 |
tcatcttcaaaggaggccaatgcctcactcttataaagctgaatggtggcctttgtgtaatttttcaataacatgtttttaaggccactacatgttacat |
5156224 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaa |
203 |
Q |
| |
|
||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || | ||| | ||||||||||||||||| | | |
|
|
| T |
5156225 |
tatctggggttgaagtatagacaatgcacatcattgtcttcaagttacgcccttccacttgaggaacttcaaatttcacagaagaaccttcagaattata |
5156324 |
T |
|
| Q |
204 |
ggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctgtgaaagtaaaga-gggctcaaaatt |
296 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
5156325 |
ggttaaccaatttggataactatcactggggaggaaacaaccaccactcccattgccatccatattctggaaaagtaaagatcggctcaaaatt |
5156418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 31 - 284
Target Start/End: Original strand, 5180913 - 5181166
Alignment:
| Q |
31 |
ctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgttattttgggttgaagtatagataatgc |
130 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || |||| |||||||||||| ||| |||| |||| | | |||||| |||||| || | |
|
|
| T |
5180913 |
ctcttatagagctgaatggtagcctttgtgtaatttttaactaacatgtttttaaggccacttgatgttacattatgtggagttgaattatagacaacga |
5181012 |
T |
|
| Q |
131 |
acatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaaggttaaccaatttggataactatcacc |
230 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||| | |||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
5181013 |
gcatcattgtcttcaagttacgtccttccaccaaagggacttcaaaagttacagaagaaccttcagaattaaaggttaaccaatttggataactatcact |
5181112 |
T |
|
| Q |
231 |
agggaggaaacaaccaccactcccattaacatccatattctgtgaaagtaaaga |
284 |
Q |
| |
|
||||||||| |||||||||| |||| |||||||||||||||||| ||||||| |
|
|
| T |
5181113 |
ggggaggaaataaccaccactttcattgacatccatattctgtgaatgtaaaga |
5181166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 5448790 - 5448547
Alignment:
| Q |
6 |
atcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgtta |
105 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| || |||| ||| |
|
|
| T |
5448790 |
atcttcaaaggaaactaatgtctcactcttatagatttgaatggtagcctttgtgtaatttttcaccaacacatttttaaggccactagatgttacatta |
5448691 |
T |
|
| Q |
106 |
ttttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaagg |
205 |
Q |
| |
|
| | ||||||||||||||| ||||||||||| || | |||| | |||| ||||||| ||||||| | |||||||||||||||||||||||| | |||| |
|
|
| T |
5448690 |
tctggggttgaagtatagacaatgcacatcaatgacgtcaattgacgctcttccacttgagggacttcaaaagttacagaagaaccttcagaattaaagg |
5448591 |
T |
|
| Q |
206 |
ttaaccaatttggataactatcaccagggaggaaacaaccacca |
249 |
Q |
| |
|
||||||||| ||||||||||||||| || ||||||||||||||| |
|
|
| T |
5448590 |
ttaaccaatctggataactatcaccgggaaggaaacaaccacca |
5448547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 4 - 272
Target Start/End: Complemental strand, 5351583 - 5351315
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||| ||| ||||||| ||||||||||||||||| || |||| |||||||||||| ||| |||| || |
|
|
| T |
5351583 |
tcatcttcaaaggaaactaatgcctcactcttatagagccgaatggtggcctttgtgtaatttttcactaacatgtttttaaggccacttgatgttacgt |
5351484 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaa |
203 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| || | ||| | ||||||||| |||| || || |
|
|
| T |
5351483 |
taccaggggttgaagtatagactatgcacatcattgtcttcaagtcacgcccttccacttgaggaacttcaaatttcacagaagaaacttctgaaataaa |
5351384 |
T |
|
| Q |
204 |
ggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||| ||||| ||| | |||||||||||| |
|
|
| T |
5351383 |
ggttaaccaatttggataactatcaccaggaagcaaacaaccactactcctattgagatccatattctg |
5351315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 272
Target Start/End: Complemental strand, 5372280 - 5372012
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||||||||||||| | |||||| || |||||||||||||||||||| ||||||||||||||||| | |||| |||||||||||| || |||| | |
|
|
| T |
5372280 |
tcatcttcaaaggagactaatgcttcactcttataaagctgaatggtggcctttgtgtaatttttcaataacatgtttttaaggccactagatgttacat |
5372181 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaa |
203 |
Q |
| |
|
||| | ||||||||| ||| | ||||||| |||||||||||||||||||||||||| |||| || | ||| | ||||||||||||||||| | |
|
|
| T |
5372180 |
tatccggagttgaagtacagacattgcacataattgtcttcaagttacgcccttccacttgaggaacttcaaatttcacagaagaaccttcagaactata |
5372081 |
T |
|
| Q |
204 |
ggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctg |
272 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
5372080 |
ggttaaccaatttggataactatcattggggaggaaacaaccaccactcccgttgccatccatattctg |
5372012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 4 - 273
Target Start/End: Complemental strand, 5098394 - 5098125
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||||||||||||| | |||||||| |||||||| ||||||||||| |||||||||| ||||| || |||| |||||||||||| ||| | |||| |
|
|
| T |
5098394 |
tcatcttcaaaggagaccaatgcctcactcttatagagctgaatggtggcctttgtgtggtttttcactaacatgtttttaaggccacttgatatcatgt |
5098295 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaa |
203 |
Q |
| |
|
|| | ||||||||||||||| ||||||||||||||| |||||| |||| |||||||| | || || ||||||||||| |||||||||||||| | || |
|
|
| T |
5098294 |
tagctggggttgaagtatagacaatgcacatcattgttttcaagctacggccttccacttggggaacttgaaaagttaccgaagaaccttcagaatgaaa |
5098195 |
T |
|
| Q |
204 |
ggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctgt |
273 |
Q |
| |
|
||||||||||| |||||||| |||| || || |||||| |||| |||||||| | ||||||||||||| |
|
|
| T |
5098194 |
ggttaaccaatctggataaccatcagtgggaagcaaacaatcaccgctcccattgagatccatattctgt |
5098125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 5398229 - 5397949
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||| ||||||||| | ||| ||||| |||||||| ||||||||||| ||||||||||||||| | || |||| |||||||||||| || |||| | |
|
|
| T |
5398229 |
tcatgttcaaaggagaataacgcctcactcttatagagctgaatggtggcctttgtgtaatttatcactaacatgtttttaaggccactagatgttacat |
5398130 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcag-agtaga |
202 |
Q |
| |
|
||| | ||||||||||| | |||||||||||||||||||||||||||||||||||| |||| || | |||||||| ||||||||| |||| | || | |
|
|
| T |
5398129 |
tatccagagttgaagtatacacaatgcacatcattgtcttcaagttacgcccttccacatgaggaacttcaaaagttaaagaagaaccctcagaactata |
5398030 |
T |
|
| Q |
203 |
aggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctgtgaaagtaaaga |
284 |
Q |
| |
|
| ||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||| ||||||| |||||||||| |
|
|
| T |
5398029 |
a-gttaaccaatttggataactatcgctggggaggaaacaaccaccattcccattgccatcgatattctagaaaagtaaaga |
5397949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 110 - 281
Target Start/End: Original strand, 5283430 - 5283601
Alignment:
| Q |
110 |
gggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaaggttaa |
209 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||| |||||| || ||||||||| ||||||||||||||||||||| || ||||| || |
|
|
| T |
5283430 |
gggttgaagtatagacaatgcacatcattgacttcaagttacacccttcaacttgagggacatcaaaagttacagaagaaccttctgaactaaaggtcaa |
5283529 |
T |
|
| Q |
210 |
ccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctgtgaaagtaa |
281 |
Q |
| |
|
||||| |||||||||||||||||| || |||||| ||||||||| ||| ||||||||||||||| ||||||| |
|
|
| T |
5283530 |
ccaatctggataactatcaccaggaagcaaacaatcaccactcctattgacatccatattctgtaaaagtaa |
5283601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 296
Target Start/End: Complemental strand, 5334344 - 5334072
Alignment:
| Q |
21 |
taatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgttattttgggttgaagta |
120 |
Q |
| |
|
||||||||| |||||||| || |||||||| ||||||||||||||| | || |||| |||||||||||| ||| || | |||| | |||||||| || |
|
|
| T |
5334344 |
taatgcctcactcttatagagttgaatggtggcctttgtgtaatttatcactaacatgtttttaaggccacttgatgt-acattatctggggttgaatta |
5334246 |
T |
|
| Q |
121 |
tagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaaggttaaccaatttggat |
220 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||| |||| || | ||| | ||||||||||||||||| | || ||||||||||||||| |
|
|
| T |
5334245 |
tagaaaatgcacatcattgtcttcaagttacccccttccacttgaggaacttcaaatttcacagaagaaccttcagaattatagcttaaccaatttggat |
5334146 |
T |
|
| Q |
221 |
aactatcaccagggaggaaacaaccaccactcccattaacatccatattctgtgaaagtaaaga-gggctcaaaatt |
296 |
Q |
| |
|
||||||||| | |||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
5334145 |
aactatcac---tggggaaacaaccaccactcccattgccatccatattctggaaaattaaagatcggctcaaaatt |
5334072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 5126741 - 5127019
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||| || |||||||| ||||| ||||||||||| ||||||| || ||||||||| ||| ||||||| |
|
|
| T |
5126741 |
tcatcttcaaaggagactgctgcctctctcttatagagttgaatggtggccttcgtgtaatttttcaccaacaagcttgtaaggccatctgatgttatgt |
5126840 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattg---tcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagta |
200 |
Q |
| |
|
||| |||||||| ||||| |||||| |||||| ||||||| ||||||||| ||| |||| || | ||||||||| ||||||||||| |||| |
|
|
| T |
5126841 |
tatccaaggttgaagaatagacaatgcatatcattactttcttcaacgtacgccctttcacttgaggtacttcaaaagttaccgaagaaccttcggagtt |
5126940 |
T |
|
| Q |
201 |
gaaggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctgtgaaagt |
279 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| || |||| |||||||| || | | |||||||||||||| ||||| |
|
|
| T |
5126941 |
gaaggctaaccaatatggataactatcaccaggaagcaaactaccaccacaccaactggcatccatattctgtaaaagt |
5127019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 272
Target Start/End: Complemental strand, 5427083 - 5426815
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
||||||||||| || | |||| |||| |||||||||||||||||| | ||||||||||||||||| | |||| ||||||||||| ||| ||| | |
|
|
| T |
5427083 |
tcatcttcaaatgacactaatacctcactcttataaagctgaatgatggcctttgtgtaatttttcaataacatgattttaaggccacttgatattacat |
5426984 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaa |
203 |
Q |
| |
|
|| ||||||||||||||| |||||||| |||||||||| ||||||||||||||| | || || |||||||||||||||||||||||||| | |
|
|
| T |
5426983 |
taccaggggttgaagtatagactatgcacataattgtcttcaggttacgcccttccacttgtggaacttgaaaagttacagaagaaccttcagaactata |
5426884 |
T |
|
| Q |
204 |
ggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctg |
272 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || ||| ||| |||||||| ||| | |||||||||||| |
|
|
| T |
5426883 |
ggttaaccactttggataactgtcaccaggaagcaaaaaactaccactcctattgagatccatattctg |
5426815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 273
Target Start/End: Complemental strand, 5346192 - 5345940
Alignment:
| Q |
24 |
tgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgttattttgggttgaagtatag |
123 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||| ||||||| ||| | ||||||| || ||||| |||| ||||||| |||| |
|
|
| T |
5346192 |
tgcctctctcttgtatagctgaatggtagcctttgtgtaatttttcaccaacaagtttctcaggccatcagatgttatattatccgaagttgaagaatag |
5346093 |
T |
|
| Q |
124 |
ataatgcacatc---attgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaaggttaaccaatttggat |
220 |
Q |
| |
|
| || || ||| ||||||||||| | ||||||||||| |||| || | |||||| ||||||||||||||||| | ||| |||||||||| ||||| |
|
|
| T |
5346092 |
acaacacatatcgttattgtcttcaacattcgcccttccacttgaggaacttcaaaagtaacagaagaaccttcagaattgaaagttaaccaatctggat |
5345993 |
T |
|
| Q |
221 |
aactatcaccagggaggaaacaaccaccactcccattaacatccatattctgt |
273 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
5345992 |
aactgtcaccaggaagcaaacaaccaccactcccattctcatccatattctgt |
5345940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 278
Target Start/End: Complemental strand, 5177922 - 5177645
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| || ||||||| ||| |||||||| ||| ||||| | |
|
|
| T |
5177922 |
tcatcttcaaaggaggctaatgcctctctcttataaagctgaatggtggcttttgtgtaattcttaaccaacaagtttgcaaggccatttgatgttatat |
5177823 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgca---catcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagta |
200 |
Q |
| |
|
||| ||||||||| |||| |||||| |||||||||||| || | | ||||||||| ||||||| | ||| |||| ||||||||||| | | |
|
|
| T |
5177822 |
tatccagggttgaagaatagtcaatgcatatcatcattgtctttaaagtgcacccttccacttgagggacttcaaacattaccgaagaaccttcgcaatt |
5177723 |
T |
|
| Q |
201 |
gaaggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctgtgaaag |
278 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||| | ||||||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
5177722 |
gaaggttaaccaatctggacaactatcactaggaaacaaacaaccaccacacccattctcatccatattctgtaaaag |
5177645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 282
Target Start/End: Original strand, 5689015 - 5689296
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||||||||||||| | ||||||||| |||||||||||||||||||| || ||||||||||| || ||||||| ||| |||||||| ||| ||||||| |
|
|
| T |
5689015 |
tcatcttcaaaggagactaatgcctcgctcttataaagctgaatggtggcttttgtgtaattcttcaccaacaagtttgcaaggccatttgatgttatgt |
5689114 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgca---catcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagta |
200 |
Q |
| |
|
||| |||||| || |||| ||||| ||||| |||||| || | ||||||||||| ||||||| | ||| |||| ||||||||||| | | |
|
|
| T |
5689115 |
tatccagggttgtagaatagtcgatgcatatcatcaatgtctttaaagtgcgcccttccacttgagggacttcaaacattaccgaagaaccttcgcaatt |
5689214 |
T |
|
| Q |
201 |
gaaggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctgtgaaagtaaa |
282 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||| | ||||||||||||| |||||| |||||||||||||| |||||||| |
|
|
| T |
5689215 |
gaaggttaaccaatctggacaactatcactaggaaacaaacaaccaccacacccattctcatccatattctgtaaaagtaaa |
5689296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 271
Target Start/End: Original strand, 23127422 - 23127689
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||||||| || || | ||||| |||||||||||| | |||||||||| ||||||||||||||||||||||||| ||||||| ||||| || || |||| |
|
|
| T |
23127422 |
tcatcttcgaacgagactaatgtctctctcttatagatctgaatggtaccctttgtgtaattttttaccaacacgtttttaacgccatccgaggtaatgt |
23127521 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaa |
203 |
Q |
| |
|
||| | |||||||||||| || || ||||| |||||||||| |||| |||||||||| |||| | | |||| ||||||||||||||||| | ||| |
|
|
| T |
23127522 |
tatctggggttgaagtattgacaacacacattattgtcttcacgttatgcccttccacttgaggagcttcaaaacttacagaagaaccttcaaaaccgaa |
23127621 |
T |
|
| Q |
204 |
ggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattct |
271 |
Q |
| |
|
|||||| | |||||||||||| ||| ||| ||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
23127622 |
acctaaccagtctggataactatcttcagtgagaaaacaaccaccacatccattgacatctatattct |
23127689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 279
Target Start/End: Original strand, 5242644 - 5242902
Alignment:
| Q |
24 |
tgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgttattttgggttgaagtatag |
123 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||||||||||||||| || |||| ||| |||||||| || ||||| ||| ||||||| |||| |
|
|
| T |
5242644 |
tgcctctctcttgtagagctgaatggtggcctttgtgtaatttttcactaacaagtttccaaggccatcagatgttatactatccgaagttgaagaatag |
5242743 |
T |
|
| Q |
124 |
ataatgcacatc---attgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaaggttaaccaatttggat |
220 |
Q |
| |
|
| | || ||| ||||||||||| | ||||||||||| ||||||| | |||||| ||||||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
5242744 |
acagcacatatcgttattgtcttcaacattcgcccttccacttgagggacttcaaaagtaacagaagaaccttcagaatcgaaggttaaccaatctggat |
5242843 |
T |
|
| Q |
221 |
aactatcaccagggaggaaacaaccaccactcccattaacatccatattctgtgaaagt |
279 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
5242844 |
aactgtcaccaggaagcaaacaaccaccactcccattctcatccatattctgttaaagt |
5242902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 4 - 194
Target Start/End: Original strand, 5065561 - 5065754
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||||||||| | |||||||||||||||||||||| |||| | ||||||| || | ||||| |
|
|
| T |
5065561 |
tcatcttcaaaggagattaacgcctctctcttatagagctgaatggtggattttgtgtaattttttaccaacaaatttgtgaggccatcagatgctatgt |
5065660 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgca---catcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttc |
194 |
Q |
| |
|
||| ||||||||| ||||| |||||| ||| ||||||||||| ||||||||| || ||||||| | ||||||||||||||||||||| |
|
|
| T |
5065661 |
tatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgccctttcatttgagggacttcaaaagttacagaagaaccttc |
5065754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 273
Target Start/End: Complemental strand, 5279747 - 5279475
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| || ||||||| ||| |||||||| ||| ||||| | |
|
|
| T |
5279747 |
tcatcttcaaaggaggctaatgcctctctcttataaagctgaatggtggcttttgtgtaattcttcaccaacaagtttgcaaggccatttgatgttatat |
5279648 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcat---tgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagta |
200 |
Q |
| |
|
||| ||||||||| |||| |||||| ||||| |||||| || | | ||||||||| ||||||| | ||| |||| ||||||||||| | | |
|
|
| T |
5279647 |
tatccagggttgaagaatagtcaatgcatatcatcaatgtctttaaagtgcacccttccacttgagggacttcaaacattaccgaagaaccttcgcaatt |
5279548 |
T |
|
| Q |
201 |
gaaggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctgt |
273 |
Q |
| |
|
|||||||||||||| |||| ||||||||| || | ||||||||||||| |||||| |||||||||||||| |
|
|
| T |
5279547 |
gaaggttaaccaatctggacaactatcacttggaaacaaacaaccaccacacccattctcatccatattctgt |
5279475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 233
Target Start/End: Original strand, 5256368 - 5256491
Alignment:
| Q |
110 |
gggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaaggttaa |
209 |
Q |
| |
|
||||||||||||||| |||||||||||||| | |||||||||||||||| || ||||| | |||||||||||||||||||||||| ||||||| |
|
|
| T |
5256368 |
gggttgaagtatagacaatgcacatcattgacatcaagttacgcccttcaacttcggggacttcaaaagttacagaagaaccttcagaactataggttaa |
5256467 |
T |
|
| Q |
210 |
ccaatttggataactatcaccagg |
233 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
5256468 |
ccaatttggatgactatcaccagg |
5256491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 5 - 161
Target Start/End: Complemental strand, 2939093 - 2938935
Alignment:
| Q |
5 |
catcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgtt |
104 |
Q |
| |
|
||||||| ||||| | ||||||||| |||||||| ||||||||||| |||||| | |||||||| | | || |||||||||||| || |||| || |
|
|
| T |
2939093 |
catcttcgaaggagactaatgcctcactcttatagagctgaatggtggcctttatataatttttcaatatcatgtttttaaggccactagatgttacatt |
2938994 |
T |
|
| Q |
105 |
attttgggttgaagtata--gataatgcacatcattgtcttcaagttacgcccttccac |
161 |
Q |
| |
|
|| | ||||| ||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2938993 |
atctggggtttaagtatatagacaatgcacatcattgtcttcaagttacgcccttccac |
2938935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 195
Target Start/End: Complemental strand, 5253696 - 5253538
Alignment:
| Q |
40 |
agctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgttattttgggttgaagtatagataatgcacatc---a |
136 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||| | | ||||| || ||| |||||| | ||||||||| |||| ||||| ||| | |
|
|
| T |
5253696 |
agctgaatggtggcctttgtgtaattttttaccaacaaatttgtgaagccatcagatgttgtgttatctggggttgaagattagacaatgcttatcttta |
5253597 |
T |
|
| Q |
137 |
ttgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttca |
195 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| | ||||| |||||||||||||||| |
|
|
| T |
5253596 |
ttgtcttcaacatacgcccttccaattgagggactttaaaaggtacagaagaaccttca |
5253538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 250
Target Start/End: Complemental strand, 5384252 - 5384128
Alignment:
| Q |
126 |
aatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaaggttaaccaatttggataacta |
225 |
Q |
| |
|
||||||||||| || ||| |||||| || ||||||| ||||| | | |||| ||||||||||||| ||| | | |||| ||||||| |||||||||||| |
|
|
| T |
5384252 |
aatgcacatcaatgactttaagttatgctcttccacttgaggggccttaaaaattacagaagaaccgtcacatttgaagcttaaccagtttggataacta |
5384153 |
T |
|
| Q |
226 |
tcaccagggaggaaacaaccaccac |
250 |
Q |
| |
|
||||| ||||| | ||||||||||| |
|
|
| T |
5384152 |
tcacctgggagaacacaaccaccac |
5384128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 5072791 - 5072960
Alignment:
| Q |
1 |
tcatcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagtta |
100 |
Q |
| |
|
|||||||||| ||||| | |||||||||||||||||| || |||||||| || || ||||||||||| |||| || ||||||||||| | ||| || |
|
|
| T |
5072791 |
tcatcatctttgaaggagactaatgcctctctcttatatagttgaatggtggctttagtgtaatttttcaccatcaagtttttaaggccgtctgatacta |
5072890 |
T |
|
| Q |
101 |
tgttattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggac |
170 |
Q |
| |
|
|||||| | | ||||| ||||| || ||| |||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
5072891 |
cattatttggtggtgaagaatagacaacgcatatcattgtcttcaatatgcgcccttccacttgagggac |
5072960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 5124572 - 5124709
Alignment:
| Q |
21 |
taatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgttattttgg-gttgaagt |
119 |
Q |
| |
|
|||||| ||||||||||| || |||||||| |||| ||||||||||| |||| |||| |||||||||||| || | |||||| |||||| || | | |
|
|
| T |
5124572 |
taatgcatctctcttatagagttgaatggtccccttcgtgtaatttttcaccatcacagttttaaggccatccgatgctatgtttttttggagtcaatga |
5124671 |
T |
|
| Q |
120 |
atagataatgcacatcattgtcttcaagttacgccctt |
157 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||| |||| |
|
|
| T |
5124672 |
atagacaatgcacattattgtctttaagttacgtcctt |
5124709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 9e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 47985505 - 47985785
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||||| ||||||| ||||||| ||| |||||||| || |||||| | || |||||| |||| | || ||||| ||||||||||||| ||| ||||||| |
|
|
| T |
47985505 |
tcatctccaaaggagattaatgtctcactcttatagagttgaatgatggctcttgtgtgatttatcactaacacgtttttaaggccatctgatgttatgt |
47985604 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaa |
203 |
Q |
| |
|
|| | |||||||||||||| |||||||||||||||||| |||||| ||| |||||| ||||||| | ||||||||| |||||||||||||| | || |
|
|
| T |
47985605 |
catctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaaccttcagaattaaa |
47985704 |
T |
|
| Q |
204 |
ggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctgtgaaagtaaaga |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
47985705 |
ggttaaccaatttggataactatcaccagggagcaaacaacaatcactcccattaacagccatattctgtaaaagtaaaga |
47985785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 47994792 - 47995072
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||||| ||||||| ||||||| ||| |||||||| || |||||| | || |||||| |||| | || ||||| ||||||||||||| ||| ||||||| |
|
|
| T |
47994792 |
tcatctccaaaggagattaatgtctcactcttatagagttgaatgatggctcttgtgtgatttatcactaacacgtttttaaggccatctgatgttatgt |
47994891 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaa |
203 |
Q |
| |
|
|| | |||||||||||||| |||||||||||||||||| |||||| ||| |||||| ||||||| | ||||||||| |||||||||||||| | || |
|
|
| T |
47994892 |
catctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaaccttcagaattaaa |
47994991 |
T |
|
| Q |
204 |
ggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctgtgaaagtaaaga |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
47994992 |
ggttaaccaatttggataactatcaccagggagcaaacaacaatcactcccattaacagccatattctgtaaaagtaaaga |
47995072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 48004079 - 48004359
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||||| ||||||| ||||||| ||| |||||||| || |||||| | || |||||| |||| | || ||||| ||||||||||||| ||| ||||||| |
|
|
| T |
48004079 |
tcatctccaaaggagattaatgtctcactcttatagagttgaatgatggctcttgtgtgatttatcactaacacgtttttaaggccatctgatgttatgt |
48004178 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaa |
203 |
Q |
| |
|
|| | |||||||||||||| |||||||||||||||||| |||||| ||| |||||| ||||||| | ||||||||| |||||||||||||| | || |
|
|
| T |
48004179 |
catctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaaccttcagaattaaa |
48004278 |
T |
|
| Q |
204 |
ggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctgtgaaagtaaaga |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
48004279 |
ggttaaccaatttggataactatcaccagggagcaaacaacaatcactcccattaacagccatattctgtaaaagtaaaga |
48004359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 48013364 - 48013644
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||||| ||||||| ||||||| ||| |||||||| || |||||| | || |||||| |||| | || ||||| ||||||||||||| ||| ||||||| |
|
|
| T |
48013364 |
tcatctccaaaggagattaatgtctcactcttatagagttgaatgatggctcttgtgtgatttatcactaacacgtttttaaggccatctgatgttatgt |
48013463 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaa |
203 |
Q |
| |
|
|| | |||||||||||||| |||||||||||||||||| |||||| ||| |||||| ||||||| | ||||||||| |||||||||||||| | || |
|
|
| T |
48013464 |
catctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaaccttcagaattaaa |
48013563 |
T |
|
| Q |
204 |
ggttaaccaatttggataactatcaccagggaggaaacaaccaccactcccattaacatccatattctgtgaaagtaaaga |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
48013564 |
ggttaaccaatttggataactatcaccagggagcaaacaacaatcactcccattaacagccatattctgtaaaagtaaaga |
48013644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 249
Target Start/End: Original strand, 36213033 - 36213278
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
||||||||||| || | |||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||| |||||||| |||| ||| | ||||| |
|
|
| T |
36213033 |
tcatcttcaaatgagactaatgcctctctcttatagatctgaatggtagcctttgtgtgattttttaccatcacgtttttaagtccatctgatgctatgt |
36213132 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaa |
203 |
Q |
| |
|
| | | | ||||||| ||||| ||| ||||| |||||||| |||||||| || ||||| ||||||||| |||| ||||||||||||||| | | ||| |
|
|
| T |
36213133 |
tttctggagttgaagaatagacaatacacattattgtctttaagttacgtccatccactcgagggacatcaaaaattacagaagaacctttgcaattgaa |
36213232 |
T |
|
| Q |
204 |
ggttaaccaatttggataactatcaccagggaggaaacaaccacca |
249 |
Q |
| |
|
||||||||||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
36213233 |
ggttaaccaatcaggataatgatcaccagggagcaaacaaccacca |
36213278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 4337068 - 4336871
Alignment:
| Q |
21 |
taatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgttattttgggttgaagta |
120 |
Q |
| |
|
|||||||||||||||| | || |||||||| | |||||||| |||| | ||||||||||||| |||||||| ||| ||||||| |||| || |||||| | |
|
|
| T |
4337068 |
taatgcctctctcttaaagagttgaatggtggtctttgtgtgatttatcaccaacacattttgaaggccatctgatgttatgtcatttgggcttgaagaa |
4336969 |
T |
|
| Q |
121 |
tagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaaggttaaccaatttgg |
218 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| |||||||| ||||||| | |||| |||||||| |||||| |||| ||| | |||||||||||| |
|
|
| T |
4336968 |
tagacaatgcacatcattgtcttcaagctacgtccttccacatgagggacttcaaaatttacagaataacctttcgagttgaaagctaaccaatttgg |
4336871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 25 - 256
Target Start/End: Complemental strand, 4362714 - 4362483
Alignment:
| Q |
25 |
gcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgttattttgggttgaagtataga |
124 |
Q |
| |
|
|||||||||||||| || |||||||| | |||||||| |||| | |||||||||||| ||||||||| ||| ||||||| || | || |||||| ||||| |
|
|
| T |
4362714 |
gcctctctcttatagagttgaatggtggtctttgtgtgatttatcaccaacacatttctaaggccatctgatgttatgtcatatgggcttgaagaataga |
4362615 |
T |
|
| Q |
125 |
taatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaaggttaaccaatttggataact |
224 |
Q |
| |
|
||||||||| |||||||||||| ||| |||||||| ||||||| | |||| |||||||| |||||| | || ||| ||||||||||||| ||| |
|
|
| T |
4362614 |
caatgcacattattgtcttcaagctacatccttccacttgagggacttcaaaaattacagaataacctttggcgttgaaacttaaccaatttgggtaatc |
4362515 |
T |
|
| Q |
225 |
atcaccagggaggaaacaaccaccactcccat |
256 |
Q |
| |
|
|||||||||||| ||| ||| ||||| ||||| |
|
|
| T |
4362514 |
atcaccagggagcaaaaaactaccacgcccat |
4362483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 4319414 - 4319646
Alignment:
| Q |
4 |
tcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgt |
103 |
Q |
| |
|
|||| ||||||||| |||||| ||||||||||| || |||||||| | |||||||| |||| | || |||||||||| |||||||| ||| ||||||| |
|
|
| T |
4319414 |
tcattttcaaaggaggataatgcttctctcttatagagttgaatggtggtctttgtgtgatttatcactaacacattttcaaggccatctgatgttatgt |
4319513 |
T |
|
| Q |
104 |
tattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaa |
203 |
Q |
| |
|
| | || |||||| ||||| ||||||||| |||||||||||| |||| |||||||| ||||||| | |||| |||||||||||||||| || | ||| |
|
|
| T |
4319514 |
cgtatgggcttgaagaatagacaatgcacattattgtcttcaagctacgtccttccacttgagggacttcaaaaattacagaagaaccttctgaattgaa |
4319613 |
T |
|
| Q |
204 |
ggttaaccaatttggataactatcaccagggag |
236 |
Q |
| |
|
| |||||||| || ||| |||||| |||||| |
|
|
| T |
4319614 |
agctaaccaatccgggtaattatcacaagggag |
4319646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 4122777 - 4122981
Alignment:
| Q |
25 |
gcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgttattttgggttgaagtataga |
124 |
Q |
| |
|
|||||||||||||| || |||||||| | |||||||| |||| | ||||||||||||| ||||||| ||| | |||| |||| || |||| | ||||| |
|
|
| T |
4122777 |
gcctctctcttatagagttgaatggtggtctttgtgtgatttatcaccaacacattttgaaggccaactgatgctatgccatttgggcttgatgaataga |
4122876 |
T |
|
| Q |
125 |
taatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaaggttaaccaatttggataact |
224 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| ||||||| | |||| |||||| |||||| |||| ||| ||||||||||||| ||| | |
|
|
| T |
4122877 |
caatgcacatcattgtcttcaagctacgtccttccacttgagggacttcaaaaacaacagaataacctttggagttgaaacttaaccaatttgggtaatt |
4122976 |
T |
|
| Q |
225 |
atcac |
229 |
Q |
| |
|
||||| |
|
|
| T |
4122977 |
atcac |
4122981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 256
Target Start/End: Complemental strand, 4346525 - 4346287
Alignment:
| Q |
25 |
gcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagt-------tatgttattttgggttgaa |
117 |
Q |
| |
|
|||||||||||||| || |||||||| | |||||||| |||| | |||||||||||||||||||||| ||| || ||||| || | || ||||| |
|
|
| T |
4346525 |
gcctctctcttatagagttgaatggtggtctttgtgtgatttatcaccaacacatttttaaggccatctgatgtctgatgttatgtcatctgggcttgaa |
4346426 |
T |
|
| Q |
118 |
gtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaaggttaaccaatttg |
217 |
Q |
| |
|
| ||||| ||||||||| |||||||||||| || | |||||||| ||||||| | ||| |||||||| |||||| |||| ||| ||| ||||||||| |
|
|
| T |
4346425 |
gaatagacaatgcacattattgtcttcaagctatgtccttccacttgagggacttcaaagattacagaataacctttggagttgaaagttgaccaatttg |
4346326 |
T |
|
| Q |
218 |
gataactatcaccagggaggaaacaaccaccactcccat |
256 |
Q |
| |
|
| ||| ||||||| ||||| ||| ||| ||||| ||||| |
|
|
| T |
4346325 |
ggtaattatcaccggggagcaaaaaactaccacgcccat |
4346287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 25569018 - 25568793
Alignment:
| Q |
9 |
ttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggcc------atatgaagttatg |
102 |
Q |
| |
|
||||||||||| ||||||||||||||| || | ||||||||| | ||| ||||||||||| |||| ||||||| |||||| |||||| | |||| |
|
|
| T |
25569018 |
ttcaaaggaaactaatgcctctctcttgtagacctgaatggtggacttggtgtaatttttcaccatgacattttgaaggccatctgaatatgatgctatg |
25568919 |
T |
|
| Q |
103 |
ttattttgggttgaagtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtaga |
202 |
Q |
| |
|
||| | ||| ||| || | |||||| |||||||| |||||| |||||||||||| |||| || | |||| |||| |||||||||||| ||| | |
|
|
| T |
25568918 |
ttagcataggtccaagaatcaacaatgcaaatcattgttttcaagacacgcccttccactcgaggtacttcaaaaattactgaagaaccttcactgtaca |
25568819 |
T |
|
| Q |
203 |
aggttaaccaatttggataactatca |
228 |
Q |
| |
|
|||| ||||||||||||||| ||||| |
|
|
| T |
25568818 |
aggtcaaccaatttggataattatca |
25568793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 4132745 - 4132814
Alignment:
| Q |
22 |
aatgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccat |
91 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| |||| |||| | |||||||||||||| ||||||| |
|
|
| T |
4132745 |
aatgcctctctcttatagagctgaatggtagtcttcgtgtgatttatcaccaacacattttttaggccat |
4132814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 31 - 250
Target Start/End: Original strand, 8016 - 8232
Alignment:
| Q |
31 |
ctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgttattttgggttgaagtatagataatgc |
130 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||||||||| || |||||||||||||| |||| || |||||||||| ||||||| || ||||| |
|
|
| T |
8016 |
ctcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatctggtgttatgttatccgcagttgaag---aggcaatgc |
8112 |
T |
|
| Q |
131 |
acatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaaggttaaccaatttggataactatcacc |
230 |
Q |
| |
|
|||||| || ||| |||||| || ||||||| ||||| ||| |||| ||||||||||||| ||| | | |||| ||||||| ||||||||||||||||| |
|
|
| T |
8113 |
acatcaatgactttaagttatgctcttccacttgaggggcattaaaaattacagaagaaccatcacaattgaagcttaaccagtttggataactatcacc |
8212 |
T |
|
| Q |
231 |
agggaggaaacaaccaccac |
250 |
Q |
| |
|
||||| | ||||||||||| |
|
|
| T |
8213 |
cgggagaacacaaccaccac |
8232 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 22583419 - 22583644
Alignment:
| Q |
24 |
tgcctctctcttataaagctgaatggtagcctttgtgtaattttttaccaacacatttttaaggccatatgaagttatgttattttgggttgaagtatag |
123 |
Q |
| |
|
|||| ||||||| || | ||||||||| |||||||| | |||||| ||||||| | || |||||| || ||||||||| ||||||||| |||| |
|
|
| T |
22583419 |
tgcccctctcttgtagaactgaatggtggcctttgtatgatttttcaccaacaaggctgtagggccatcggatcttatgttatccggggttgaagaatag |
22583518 |
T |
|
| Q |
124 |
ataatgcacatcattgt---cttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaaggttaaccaatttggat |
220 |
Q |
| |
|
| |||||| |||||| | |||||| ||||||||| ||| | |||||| | |||||||||||||||||||| | | |||| ||||||||||||||| |
|
|
| T |
22583519 |
acaatgcagatcattattgacttcaacatacgccctttcactacagggactttaaaagttacagaagaaccttggcaattgaagtttaaccaatttggat |
22583618 |
T |
|
| Q |
221 |
aactatcaccagggaggaaacaacca |
246 |
Q |
| |
|
|| |||||||||| || ||||||||| |
|
|
| T |
22583619 |
aattatcaccaggaagcaaacaacca |
22583644 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 56 - 230
Target Start/End: Complemental strand, 8879660 - 8879486
Alignment:
| Q |
56 |
ttgtgtaattttttaccaacacatttttaaggccatatgaagttatgttattttgggttgaagtatagataatgcacatcattgtcttcaagttacgccc |
155 |
Q |
| |
|
|||||| |||| | ||||||| |||||| || |||| ||| || |||||| | ||||||| ||||||| |||||||||||| | ||||||||| | ||| |
|
|
| T |
8879660 |
ttgtgtgatttataaccaacatattttttagtccatctgatattgtgttatctggggttgatgtatagacaatgcacatcatcgacttcaagtttctccc |
8879561 |
T |
|
| Q |
156 |
ttccaccagagggacatgaaaagttacagaagaaccttcagagtagaaggttaaccaatttggataactatcacc |
230 |
Q |
| |
|
||| || |||| || | |||||||||| ||| ||||||| | ||| |||||||||||||||||| ||||||| |
|
|
| T |
8879560 |
ttcaacttgaggaactttaaaagttacacaaggaccttcacaactgaaagttaaccaatttggataattatcacc |
8879486 |
T |
|
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